NTDB

Overview

Name	cytR	Type	Regulator
Locus tag	LWM38_RS01110	Genome accession	NZ_CP090019
Coordinates	244027..245031 (-)	Length	334 a.a.
NCBI ID	WP_017055857.1	Uniprot ID	A0A2N7JD19
Organism	Vibrio kanaloae strain KH-4
Function	promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 239027..250031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LWM38_RS01080 (LWM38_01080)	zapB	239172..239414 (+)	243	WP_009848877.1	cell division protein ZapB	-
LWM38_RS01085 (LWM38_01085)	rraA	239503..240018 (-)	516	WP_017055862.1	ribonuclease E activity regulator RraA	-
LWM38_RS01090 (LWM38_01090)	-	240092..241009 (-)	918	WP_233894514.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LWM38_RS01095 (LWM38_01095)	hslU	241199..242539 (-)	1341	WP_146441576.1	HslU--HslV peptidase ATPase subunit	-
LWM38_RS01100 (LWM38_01100)	hslV	242598..243146 (-)	549	WP_017055859.1	ATP-dependent protease subunit HslV	-
LWM38_RS01105 (LWM38_01105)	ftsN	243371..243904 (-)	534	WP_233894516.1	cell division protein FtsN	-
LWM38_RS01110 (LWM38_01110)	cytR	244027..245031 (-)	1005	WP_017055857.1	DNA-binding transcriptional regulator CytR	Regulator
LWM38_RS01115 (LWM38_01115)	priA	245271..247472 (-)	2202	WP_077680958.1	primosomal protein N'	-
LWM38_RS01120 (LWM38_01120)	rpmE	247815..248033 (+)	219	WP_017055855.1	50S ribosomal protein L31	-
LWM38_RS01125 (LWM38_01125)	-	248384..249673 (+)	1290	WP_017055854.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

Download Length: 334 a.a. Molecular weight: 36548.06 Da Isoelectric Point: 6.8459

                                >NTDB_id=640232 LWM38_RS01110 WP_017055857.1 244027..245031(-) (cytR) [Vibrio kanaloae strain KH-4]

MATMKDVAQLAGVSTATVSRALMTPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG

IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN

LTSAFEAVNYLAQLGHKRIAQISGPTSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGTKAVRQLLALPEQPTA

IFCHNDSMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQTGSRLLE

AKLVVRGSTAPPRI

Nucleotide

Download Length: 1005 bp

                                >NTDB_id=640232 LWM38_RS01110 WP_017055857.1 244027..245031(-) (cytR) [Vibrio kanaloae strain KH-4]

ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACCGCAACGGTATCACGTGCATTGATGACCCCAGAGAA

AGTCTCAGTTTCTACTCGCAAACGAGTAGAGGCAGCAGTACTTGAAGCTGGATACTCACCCAACACATTAGCTCGAAACT

TACGTCGCAACGAATCAAAAACCATCATTACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAAATCATTCGTGGT

ATCGAAGATGCAGCTGTAGAAAATGATTACCTAGTTCTGCTTGGCGACAGTGGTCAACAGAAGAAACGTGAATCATCATT

CGTAAACTTGGTGTTCACCAAACAGGCTGATGGCATGCTACTGCTTGGCACCGACCACCCATTTGATGTCAGTAAATCTG

AACAGAAGAACTTACCACCTATGGTTATGGCATGTGAGTTTGCACCTGAACTTGAGTTGCCAACGGTACACATCGATAAC

TTGACGTCTGCATTTGAAGCCGTCAACTACCTAGCTCAGTTAGGTCATAAGCGCATCGCACAAATATCCGGCCCAACCTC

CGCCACTCTATGTAAATTCCGCCAGCAAGGCTATCAACAGGCATTGCGCCGGGCTGGTGTATCAATGAACCCAGCTTACA

GTACTGTTGGTGATTTTACCTTTGAAGCTGGAACAAAAGCCGTTCGTCAATTATTAGCACTACCGGAACAACCAACCGCA

ATTTTCTGTCATAACGATTCAATGGCAATTGGCGCTATTCAAGAAGCAAAAAAATTAGGTTTGCGTGTTCCTCAAGATCT

CTCCATTGTTGGTTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCACTAACGACCATTTCTCAGCCTCGTTACG

AAATCGGACGCCAAGCGATGCTGATGATGCTCGACCTACTTAAAGGTAACGATGTTCAAACAGGTTCACGCCTACTTGAA

GCTAAACTCGTGGTTCGTGGCAGTACAGCGCCACCTCGAATTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2N7JD19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
cytR	Vibrio cholerae C6706	88.855	99.401	0.883
cytR	Vibrio parahaemolyticus RIMD 2210633	87.087	99.701	0.868

Detailed information NTG0640232