Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   FH104_RS08645 Genome accession   NZ_CP090014
Coordinates   1745302..1746018 (-) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis strain acrlk     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740302..1751018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH104_RS08620 (FH104_08600) - 1740332..1740970 (+) 639 WP_017175284.1 redox-sensing transcriptional repressor Rex -
  FH104_RS08625 (FH104_08605) - 1741037..1741195 (+) 159 Protein_1683 sulfurtransferase TusA family protein -
  FH104_RS08630 (FH104_08610) - 1741305..1742549 (+) 1245 WP_054105819.1 ammonium transporter -
  FH104_RS08635 (FH104_08615) - 1742804..1744291 (+) 1488 WP_054105820.1 sucrose-6-phosphate hydrolase -
  FH104_RS08640 (FH104_08620) - 1744292..1745251 (+) 960 WP_048678788.1 carbohydrate kinase family protein -
  FH104_RS08645 (FH104_08625) agrA 1745302..1746018 (-) 717 WP_002455088.1 quorum-sensing response regulator AgrA Regulator
  FH104_RS08650 (FH104_08630) agrC 1746031..1747320 (-) 1290 WP_070519325.1 quorum-sensing sensor histidine kinase AgrC -
  FH104_RS08655 (FH104_08635) agrD 1747344..1747484 (-) 141 WP_054105555.1 cyclic lactone autoinducer peptide AgrD -
  FH104_RS08660 (FH104_08640) - 1747487..1748053 (-) 567 WP_049379609.1 accessory gene regulator AgrB -
  FH104_RS08665 (FH104_08645) - 1748755..1749540 (-) 786 WP_054105554.1 carbon-nitrogen family hydrolase -
  FH104_RS08670 (FH104_08650) - 1749671..1750294 (-) 624 WP_054105553.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=640216 FH104_RS08645 WP_002455088.1 1745302..1746018(-) (agrA) [Staphylococcus hominis strain acrlk]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=640216 FH104_RS08645 WP_002455088.1 1745302..1746018(-) (agrA) [Staphylococcus hominis strain acrlk]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAATAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTAGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGGAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTTAAAACGCGAATAATAGATTGTATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGTAATGTTGAGACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCGCATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGTTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGCCATAATATCGATTCAGTCG
ATTCTAAAGAACGAATTGTAACTTTCAGAAACGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874