Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ODQ18_RS01615 Genome accession   NZ_CP107039
Coordinates   315019..315714 (+) Length   231 a.a.
NCBI ID   WP_041850180.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 310019..320714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS01595 (ODQ18_01595) folC 310949..312241 (+) 1293 WP_041339279.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ODQ18_RS01600 (ODQ18_01600) comC 312381..313127 (+) 747 WP_080332541.1 prepilin peptidase Machinery gene
  ODQ18_RS01605 (ODQ18_01605) spoIIB 313261..314259 (+) 999 WP_041850181.1 stage II sporulation protein SpoIIB -
  ODQ18_RS01610 (ODQ18_01610) maf 314413..314982 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ODQ18_RS01615 (ODQ18_01615) ysxA/radC 315019..315714 (+) 696 WP_041850180.1 RadC family protein Machinery gene
  ODQ18_RS01620 (ODQ18_01620) mreB 315806..316819 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ODQ18_RS01625 (ODQ18_01625) mreC 316850..317722 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  ODQ18_RS01630 (ODQ18_01630) mreD 317719..318237 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  ODQ18_RS01635 (ODQ18_01635) minC 318290..318970 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  ODQ18_RS01640 (ODQ18_01640) minD 318972..319778 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26167.49 Da        Isoelectric Point: 7.9141

>NTDB_id=640203 ODQ18_RS01615 WP_041850180.1 315019..315714(+) (ysxA/radC) [Bacillus subtilis strain 11060]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILATVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=640203 ODQ18_RS01615 WP_041850180.1 315019..315714(+) (ysxA/radC) [Bacillus subtilis strain 11060]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTACAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424