Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ODQ18_RS00600 Genome accession   NZ_CP107039
Coordinates   105435..106145 (+) Length   236 a.a.
NCBI ID   WP_041851103.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 100435..111145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS00580 (ODQ18_00580) ytfP 100914..102176 (-) 1263 WP_072173641.1 NAD(P)/FAD-dependent oxidoreductase -
  ODQ18_RS00585 (ODQ18_00585) murJ 102380..104014 (+) 1635 WP_041851104.1 lipid II flippase MurJ -
  ODQ18_RS00590 (ODQ18_00590) rsuA 104083..104802 (+) 720 WP_014480587.1 pseudouridine synthase -
  ODQ18_RS00595 (ODQ18_00595) ytzE 104924..105145 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ODQ18_RS00600 (ODQ18_00600) pptA 105435..106145 (+) 711 WP_041851103.1 ABC transporter ATP-binding protein Regulator
  ODQ18_RS00605 (ODQ18_00605) ythQ 106142..107299 (+) 1158 WP_041851102.1 ABC transporter permease -
  ODQ18_RS00610 (ODQ18_00610) pbuO 107338..108636 (-) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  ODQ18_RS00615 (ODQ18_00615) pepV 108733..110124 (+) 1392 WP_029318264.1 dipeptidase PepV -
  ODQ18_RS00620 (ODQ18_00620) cysK 110158..111093 (-) 936 WP_003229237.1 cysteine synthase A -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26575.63 Da        Isoelectric Point: 5.3508

>NTDB_id=640194 ODQ18_RS00600 WP_041851103.1 105435..106145(+) (pptA) [Bacillus subtilis strain 11060]
MTNLLEASIEQAGYTSRNKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=640194 ODQ18_RS00600 WP_041851103.1 105435..106145(+) (pptA) [Bacillus subtilis strain 11060]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAATAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTACCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

44.248

95.763

0.424