Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   VEGS_RS16290 Genome accession   NZ_AP021891
Coordinates   3375812..3376417 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 2017.01.04CC     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3370812..3381417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEGS_RS16270 (VEGS01_31540) aes 3370849..3371808 (+) 960 WP_000801849.1 acetyl esterase -
  VEGS_RS16275 (VEGS01_31550) hemH 3371805..3372767 (-) 963 WP_001250117.1 ferrochelatase -
  VEGS_RS16280 (VEGS01_31560) adk 3373003..3373647 (-) 645 WP_001220233.1 adenylate kinase -
  VEGS_RS16285 (VEGS01_31570) htpG 3373828..3375702 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  VEGS_RS16290 (VEGS01_31580) recR 3375812..3376417 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  VEGS_RS16295 (VEGS01_31590) ybaB 3376417..3376746 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  VEGS_RS16300 (VEGS01_31600) dnaX 3376799..3378730 (-) 1932 WP_124038473.1 DNA polymerase III subunit gamma/tau -
  VEGS_RS16305 (VEGS01_31610) apt 3378859..3379410 (-) 552 WP_124038472.1 adenine phosphoribosyltransferase -
  VEGS_RS16310 (VEGS01_31620) ybaN 3379563..3379940 (-) 378 WP_001188905.1 DUF454 family protein -
  VEGS_RS16315 (VEGS01_31630) priC 3380010..3380537 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  VEGS_RS16320 (VEGS01_31640) rsmS 3380551..3380712 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=64018 VEGS_RS16290 WP_001195025.1 3375812..3376417(-) (recR) [Escherichia coli strain 2017.01.04CC]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=64018 VEGS_RS16290 WP_001195025.1 3375812..3376417(-) (recR) [Escherichia coli strain 2017.01.04CC]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment