Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ODS73_RS09695 Genome accession   NZ_CP107038
Coordinates   1872939..1873649 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain BM6001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1867939..1878649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS09680 (ODS73_09670) - 1868480..1868728 (-) 249 WP_000364990.1 YneF family protein -
  ODS73_RS09685 (ODS73_09675) treC 1868984..1870609 (-) 1626 WP_000171220.1 alpha,alpha-phosphotrehalase -
  ODS73_RS09690 (ODS73_09680) treP 1870787..1872754 (-) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  ODS73_RS09695 (ODS73_09685) treR 1872939..1873649 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  ODS73_RS09700 (ODS73_09690) - 1873806..1875132 (+) 1327 Protein_1931 ISL3 family transposase -
  ODS73_RS09705 (ODS73_09695) - 1875207..1876133 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  ODS73_RS09710 (ODS73_09700) amiE 1876144..1877211 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  ODS73_RS09715 (ODS73_09705) amiD 1877220..1878146 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=640148 ODS73_RS09695 WP_000760673.1 1872939..1873649(+) (treR) [Streptococcus pneumoniae strain BM6001]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=640148 ODS73_RS09695 WP_000760673.1 1872939..1873649(+) (treR) [Streptococcus pneumoniae strain BM6001]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593