Detailed information NTG0640128

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: LV497_RS05475
• Genome accession: NZ_CP090007
• Coordinates: 1204297..1206747 (+)
• Length: 816 a.a.
• NCBI ID: WP_245084175.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain SALI-10
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1199297..1211747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LV497_RS05450 (LV497_05450)	ahpC	1200193..1200753 (-)	561	WP_022496765.1	alkyl hydroperoxide reductase subunit C	-
LV497_RS05455 (LV497_05455)	rpsB	1201026..1201793 (+)	768	WP_002886342.1	30S ribosomal protein S2	-
LV497_RS05460 (LV497_05460)	tsf	1201904..1202944 (+)	1041	WP_002886343.1	translation elongation factor Ts	-
LV497_RS05465 (LV497_05465)	-	1203053..1203523 (-)	471	WP_004182164.1	small multi-drug export protein	-
LV497_RS05470 (LV497_05470)	-	1203841..1204296 (+)	456	WP_014633783.1	CtsR family transcriptional regulator	-
LV497_RS05475 (LV497_05475)	clpC	1204297..1206747 (+)	2451	WP_245084175.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
LV497_RS05480 (LV497_05480)	pbp3	1206877..1208133 (-)	1257	WP_022496763.1	D-alanyl-D-alanine carboxypeptidase PBP3	-
LV497_RS05485 (LV497_05485)	pbp3	1208278..1209525 (-)	1248	WP_022496762.1	D-alanyl-D-alanine carboxypeptidase PBP3	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90166.55 Da
• Isoelectric Point: 6.0145

>NTDB_id=640128 LV497_RS05475 WP_245084175.1 1204297..1206747(+) (clpC) [Streptococcus salivarius strain SALI-10]
MTTYSRKMQAIFHRAQLEAERFGSPFLETWHVLLAMVEVPGSVAYLTFTDFEDRIRAEEIETAAVLAMEKSPKDLSESDI
IDLRAQSHALGAMLQEAEGIASVTGAVEVGSEHVLMAFLLHKDLMVCRLLEVAGFQYKDDSDKPRIIDLRRSLERYAGLS
KQDLKAIHDLRKPKKSKASGNFANMMQPPQSSTGELSDYTKDLTAVAESGALDPVIGREKEISRMIQVLSRKTKNNPVLV
GEAGVGKTALALGLAQRIASGEVPFELADMRILELDMMSVVAGTRFRGDFEERMNQIIDEIEADGKIILFIDELHTIIGS
GSGIDSTLDAANILKPALARGTLHMVGATTQAEYQKHIEKDAALSRRFAKITIEEPSVAEAIDILKGLRSSYEDYHRVTI
TDEAVETAVKAAHRYLTSKNLPDSAIDLLDEASATVQGRIKKEAKLEITPLDEALLSGDMKAAVKQYKASQKAKLPKPAL
VDADQIMQTLSRLSGIPVEKMTQADSKRYLNLEAELHKRVIGQDEAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVG
KTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNIL
LQVLDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGARDISHNHQAMQSRIMEELKKAYRPEFINRIDEKVV
FHSLEEEQLREIVKIMVKPLVSALAEKGIDLKFQPAVLKHLAKDGYDVEMGARPLRRTIQTQVEDKLSELLLGGQVVSGQ
TLKIGCSKDKLTFTVV

Nucleotide

• Length: 2451 bp

>NTDB_id=640128 LV497_RS05475 WP_245084175.1 1204297..1206747(+) (clpC) [Streptococcus salivarius strain SALI-10]
ATGACGACATATTCAAGAAAAATGCAGGCCATTTTCCATCGTGCTCAGCTTGAGGCAGAGCGTTTTGGAAGTCCTTTCTT
GGAGACTTGGCATGTGCTTCTGGCTATGGTTGAGGTTCCAGGATCTGTAGCCTACCTAACATTTACTGATTTTGAGGACC
GTATTCGTGCGGAAGAGATTGAGACCGCTGCTGTACTAGCGATGGAGAAAAGTCCAAAAGACTTGTCTGAATCAGATATT
ATCGATTTACGTGCACAGTCACATGCTTTAGGGGCTATGTTGCAAGAGGCAGAGGGAATTGCTAGTGTAACTGGTGCTGT
AGAGGTAGGGTCTGAACATGTATTGATGGCCTTTCTCCTTCATAAGGATTTGATGGTTTGTCGTCTCCTTGAAGTTGCTG
GTTTTCAATATAAGGATGACAGCGATAAGCCTCGCATTATCGATTTACGACGTTCTTTGGAGCGTTACGCAGGTCTTAGT
AAGCAAGATTTGAAGGCCATTCACGACCTTCGTAAGCCTAAAAAGTCAAAGGCATCAGGTAATTTTGCTAATATGATGCA
GCCTCCTCAATCTTCTACTGGGGAACTGTCAGATTACACAAAAGACTTAACGGCAGTAGCCGAGTCAGGTGCTCTTGATC
CTGTTATTGGACGTGAGAAAGAAATTTCACGCATGATTCAGGTTTTGAGTCGTAAAACGAAGAATAACCCAGTTCTTGTG
GGTGAAGCAGGTGTTGGTAAGACGGCACTTGCGCTTGGCTTAGCACAGCGTATTGCTTCAGGCGAAGTACCTTTTGAGTT
GGCTGATATGCGTATCTTAGAGCTTGATATGATGAGTGTGGTTGCAGGAACACGTTTCCGTGGCGATTTCGAAGAACGTA
TGAATCAGATCATTGATGAGATTGAAGCTGATGGAAAAATCATTCTCTTTATTGACGAATTGCATACGATTATCGGTTCT
GGTTCAGGTATTGATAGTACCTTAGATGCGGCGAATATTTTGAAACCCGCTCTAGCACGTGGAACCCTTCATATGGTTGG
AGCAACTACTCAAGCTGAGTACCAGAAGCATATTGAGAAAGATGCAGCTCTTTCTCGCCGTTTTGCTAAGATTACAATCG
AGGAGCCAAGTGTAGCTGAGGCGATTGATATTCTAAAAGGCCTACGGTCGTCTTATGAAGACTATCATCGTGTAACGATT
ACTGATGAGGCGGTTGAGACAGCAGTCAAGGCAGCCCACCGTTATTTGACGAGTAAAAACTTACCTGACTCTGCCATTGA
CCTTTTAGATGAAGCGAGTGCAACTGTTCAAGGTCGTATCAAAAAAGAAGCCAAACTTGAAATAACGCCTTTGGACGAAG
CGCTTCTATCTGGTGATATGAAGGCTGCTGTTAAACAATATAAGGCTAGCCAAAAAGCAAAATTACCAAAACCTGCCTTG
GTAGATGCAGATCAGATTATGCAAACCCTTAGTCGTCTATCAGGTATTCCTGTTGAGAAGATGACTCAGGCAGATAGCAA
GCGTTACTTGAATCTGGAAGCAGAGCTTCACAAACGTGTTATTGGTCAAGACGAAGCAGTTTCAGCGATTAGTCGTGCTA
TTCGTCGTAACCAGTCAGGTATTCGTACTGGCAAACGTCCGATTGGTTCCTTCATGTTCCTTGGACCTACTGGTGTTGGT
AAGACAGAATTGGCCAAGGCTTTGGCGGAGGTTCTCTTTGATGATGAGTCAGCTTTGCTTCGCTTTGACATGTCAGAATA
CATGGAAAAATTTGCGGCTAGCCGCCTTAACGGTGCTCCTCCAGGTTATGTTGGATATGATGAGGGTGGTGAGTTAACAG
AAAAAGTTCGTAACAAGCCTTACTCAGTTCTTCTTTTTGACGAGGTAGAAAAGGCTCACCCAGACATTTTCAACATTCTC
TTACAGGTTTTGGATGATGGTGTCTTGACGGATAGTCGAGGTCGTAAAGTCGACTTCTCAAATACCATTATCATAATGAC
TTCGAACTTGGGGGCGACTGCTCTTCGCGATGATAAGACTGTTGGTTTTGGTGCTCGAGACATTTCTCATAATCATCAAG
CTATGCAGTCACGTATCATGGAAGAGCTTAAGAAGGCCTACCGTCCAGAGTTTATCAACCGTATTGATGAGAAGGTTGTC
TTCCATAGCTTAGAGGAAGAACAGCTTCGTGAGATTGTCAAAATTATGGTAAAACCGTTGGTTTCAGCTTTGGCTGAAAA
AGGGATTGACTTGAAATTCCAACCAGCTGTCCTCAAGCATTTGGCTAAAGATGGCTATGATGTTGAGATGGGTGCTCGTC
CATTACGTCGCACGATTCAAACTCAGGTTGAGGATAAGTTATCTGAGCTCTTACTAGGCGGCCAAGTAGTGAGTGGACAA
ACCCTTAAGATTGGTTGTTCGAAAGATAAATTAACCTTTACAGTAGTGTAA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (108-135)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-46)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (724-804)

• AAA lid domain (AAA_lid_9) (377-455)

• ATPase family associated with various cellular activities (AAA) (AAA) (238-370)

• AAA domain (Cdc48 subfamily) (AAA_2) (546-717)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus thermophilus LMG 18311	94.975	100	0.95
clpC	Streptococcus thermophilus LMD-9	94.853	100	0.949
clpC	Streptococcus mutans UA159	72.917	100	0.729
clpC	Streptococcus pneumoniae TIGR4	67.402	100	0.674
clpC	Streptococcus pneumoniae Rx1	67.402	100	0.674
clpC	Streptococcus pneumoniae D39	67.402	100	0.674
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.344	100	0.507
clpC	Bacillus subtilis subsp. subtilis str. 168	46.78	100	0.472
clpE	Streptococcus mutans UA159	47.833	76.348	0.365
clpC	Lactococcus lactis subsp. cremoris KW2	44.629	81.005	0.362