Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ODS73_RS06505 Genome accession   NZ_CP107038
Coordinates   1271401..1272678 (-) Length   425 a.a.
NCBI ID   WP_000522321.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266401..1277678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS06490 (ODS73_06485) - 1266814..1268979 (+) 2166 WP_284060502.1 ABC transporter substrate-binding protein/permease -
  ODS73_RS06495 (ODS73_06490) - 1268979..1269719 (+) 741 WP_001096316.1 amino acid ABC transporter ATP-binding protein -
  ODS73_RS06500 (ODS73_06495) zwf 1269868..1271355 (+) 1488 WP_000096129.1 glucose-6-phosphate dehydrogenase -
  ODS73_RS06505 (ODS73_06500) pilA 1271401..1272678 (-) 1278 WP_000522321.1 signal recognition particle-docking protein FtsY Machinery gene
  ODS73_RS06510 (ODS73_06505) - 1272682..1273500 (-) 819 WP_000763432.1 Cof-type HAD-IIB family hydrolase -
  ODS73_RS06515 (ODS73_06510) - 1273500..1274294 (-) 795 WP_054365117.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47440.58 Da        Isoelectric Point: 4.1993

>NTDB_id=640126 ODS73_RS06505 WP_000522321.1 1271401..1272678(-) (pilA) [Streptococcus pneumoniae strain BM6001]
MGLFDRLFGKKEEPKIEEVVKEALENLDLSEDVDPTFTEVEEVSQEEAEVEIVEQAVFQEEEIQDTVEESLDLEPVVEVS
QKEVEEFPHSEEGNTEFLATVEENNSEILEAERPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEEL
LIMSDVGVQVASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGK
LAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDN
LMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIG
FGEKIDDIGEFNSENFMKGLLEGLI

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=640126 ODS73_RS06505 WP_000522321.1 1271401..1272678(-) (pilA) [Streptococcus pneumoniae strain BM6001]
ATGGGATTGTTTGACCGTCTATTCGGAAAAAAAGAAGAACCTAAAATCGAAGAAGTTGTAAAAGAAGCTCTGGAAAATCT
TGATTTGTCTGAAGATGTTGATCCTACCTTCACAGAAGTTGAGGAAGTTTCTCAGGAAGAAGCAGAGGTTGAAATTGTTG
AACAAGCTGTGTTCCAAGAAGAGGAAATCCAAGACACAGTTGAAGAAAGTCTGGATTTAGAGCCAGTTGTAGAAGTTTCT
CAAAAAGAAGTCGAAGAATTTCCACACTCAGAAGAAGGGAATACTGAGTTTCTAGCGACTGTAGAAGAAAATAATTCTGA
AATTCTTGAAGCAGAAAGGCCTCAAACAGAAGAAACTGTTCAGGAAAAATATGACCGCAGTCTTAAGAAAACTCGCACAG
GTTTCGGTGCCCGCTTGAATGCCTTCTTTGCTAACTTCCGCTCTGTTGACGAAGAATTTTTCGAGGAACTGGAAGAACTG
TTGATTATGAGTGATGTTGGTGTCCAAGTCGCTTCTAACTTAACGGAGGAACTACGTTACGAAGCCAAGCTTGAAAATGC
CAAGAAACCTGATGCACTTCGTCGTGTCATCATTGAGAAATTGGTTGAGCTTTATGAAAAGGATGGTAGCTACGATGAAA
GCATCCACTTCCAAGATAACTTGACAGTTATGCTCTTTGTTGGTGTGAATGGTGTTGGGAAAACAACTTCTATCGGAAAA
CTAGCCCACCGCTACAAACGAGCTGGTAAGAAGGTCATGCTGGTTGCAGCAGATACCTTCCGTGCGGGTGCAGTAGCTCA
GCTAGCTGAATGGGGCCGACGAGTAGATGTTCCAGTAGTAACTGGACCTGAAAAAGCTGATCCAGCCAGCGTGGTCTTTG
ATGGTATGGAACGTGCCGTGGCTGAAGGTATCGATATTCTCATGATTGATACTGCTGGTCGTCTGCAAAATAAGGATAAC
CTTATGGCTGAGTTGGAAAAGATTGGTCGTATTATCAAACGTGTTGTGCCAGAAGCACCACATGAAACCTTCTTGGCACT
TGATGCATCAACAGGTCAAAATGCCCTAGTACAGGCCAAAGAATTTTCGAAAATCACACCTTTAACGGGAATTGTTTTGA
CTAAGATTGATGGAACTGCTCGAGGAGGTGTGGTTCTAGCCATTCGTGAAGAACTCAATATTCCTGTAAAATTGATTGGT
TTTGGTGAAAAAATCGATGATATTGGAGAGTTTAACTCAGAAAACTTTATGAAAGGTCTCTTGGAAGGTTTAATCTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(222-421)

SRP54-type protein, helical bundle domain (SRP54_N)

(135-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

35.632

100

0.365