Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LV497_RS04380 Genome accession   NZ_CP090007
Coordinates   1023837..1024547 (+) Length   236 a.a.
NCBI ID   WP_022496083.1    Uniprot ID   A0AB33ZGA7
Organism   Streptococcus salivarius strain SALI-10     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018837..1029547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS04370 (LV497_04370) treC 1020024..1021649 (-) 1626 WP_104021410.1 alpha,alpha-phosphotrehalase -
  LV497_RS04375 (LV497_04375) treP 1021704..1023680 (-) 1977 WP_245085392.1 PTS system trehalose-specific EIIBC component -
  LV497_RS04380 (LV497_04380) treR 1023837..1024547 (+) 711 WP_022496083.1 trehalose operon repressor Regulator
  LV497_RS04385 (LV497_04385) - 1024601..1025161 (-) 561 WP_022496082.1 TIGR01440 family protein -
  LV497_RS04390 (LV497_04390) - 1025177..1025515 (-) 339 WP_014635137.1 hypothetical protein -
  LV497_RS04395 (LV497_04395) - 1025548..1025904 (-) 357 WP_002885732.1 hypothetical protein -
  LV497_RS04400 (LV497_04400) - 1026165..1027046 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  LV497_RS04410 (LV497_04410) - 1027469..1028764 (-) 1296 WP_245085395.1 gamma-glutamylcysteine synthetase -
  LV497_RS04415 (LV497_04415) rplQ 1029014..1029400 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27352.00 Da        Isoelectric Point: 6.8431

>NTDB_id=640121 LV497_RS04380 WP_022496083.1 1023837..1024547(+) (treR) [Streptococcus salivarius strain SALI-10]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQSLNSQTNVISLDKIIVDSKLSERTGLSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=640121 LV497_RS04380 WP_022496083.1 1023837..1024547(+) (treR) [Streptococcus salivarius strain SALI-10]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAATTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAAGCCTTAATTCGCAAACCAATGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAAACTCTCAGAAAGAACTGGTCTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTCGTTGATTATGCCAAGCGCCACCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602