Detailed information NTG0640089

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: ODS73_RS02405
• Genome accession: NZ_CP107038
• Coordinates: 438289..440655 (-)
• Length: 788 a.a.
• NCBI ID: WP_219576592.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain BM6001
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 433289..445655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ODS73_RS02370 (ODS73_02370)	vraR	433651..434283 (+)	633	WP_000698434.1	response regulator transcription factor	Regulator
ODS73_RS02380 (ODS73_02380)	-	434347..435044 (+)	698	Protein_469	DNA alkylation repair protein	-
ODS73_RS02385 (ODS73_02385)	-	435194..435433 (+)	240	WP_000754501.1	hypothetical protein	-
ODS73_RS02390 (ODS73_02390)	cbpG	435514..436104 (+)	591	Protein_471	choline-binding protein CbpG	-
ODS73_RS02395 (ODS73_02395)	-	436459..436797 (+)	339	WP_001812733.1	tyrosine-type recombinase/integrase	-
ODS73_RS02400 (ODS73_02400)	tig	436958..438241 (+)	1284	WP_138009661.1	trigger factor	-
ODS73_RS02405 (ODS73_02405)	recD/recD2/recDB	438289..440655 (-)	2367	WP_219576592.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ODS73_RS02410 (ODS73_02410)	-	440732..440854 (-)	123	WP_001815645.1	hypothetical protein	-
ODS73_RS02415 (ODS73_02415)	lepB	440934..441548 (-)	615	WP_001820908.1	signal peptidase I	-
ODS73_RS02420 (ODS73_02420)	rnhC	441552..442433 (-)	882	WP_000146875.1	ribonuclease HIII	-
ODS73_RS02425 (ODS73_02425)	zapA	442520..442822 (+)	303	WP_000002019.1	cell division protein ZapA	-
ODS73_RS02430 (ODS73_02430)	-	442819..443367 (+)	549	WP_000622953.1	CvpA family protein	-

Sequence

Protein

• Length: 788 a.a.
• Molecular weight: 88508.25 Da
• Isoelectric Point: 4.5114

>NTDB_id=640089 ODS73_RS02405 WP_219576592.1 438289..440655(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain BM6001]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMILAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH
ITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDTDFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNSIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSASEQSYILTEENWDSIPAMIGITDTDLKEIFGK

Nucleotide

• Length: 2367 bp

>NTDB_id=640089 ODS73_RS02405 WP_219576592.1 438289..440655(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain BM6001]
ATGGAAGTTTATTTTTCAGGAACTATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATACCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGATTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGCCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGTCATGATTTAGAAACCATTCAAAAACAT
ATCACTACTATCGAGGAAGAGCTGGGAATTGAGTATGATAACATTCAAAAACAGGCTATCTGTGATGCTATCCAGAATAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGGATCATCGCTGTTTACGCCCTGTTAG
AGGGACTTGACCTCAGGAAGAAAAGCAACCTGCCCATTCTTCTTGCTGCTCCAACTGGACGAGCCGCTCGTCGCATGAAT
GAATTGACAGGCTTGCCTAGCGCGACCATACACCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATACTGACTTTATCATCGTGGATGAATTCTCTATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTACTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCGAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATAGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGGGAGACAAGGTCATTCATTTGGTTAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACTATGCTACCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATCTACTGGAGAATGTTGAAGAAAAGCAACAAGC
TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACAGCATTCCAGCCA
TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (662-709)

• AAA domain (AAA_30) (332-520)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (574-644)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.016	97.462	0.4