Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ODS73_RS02270 Genome accession   NZ_CP107038
Coordinates   415820..416416 (-) Length   198 a.a.
NCBI ID   WP_000248785.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 410820..421416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS02265 (ODS73_02265) pbp1a 413664..415823 (-) 2160 WP_284060608.1 penicillin-binding protein PBP1A -
  ODS73_RS02270 (ODS73_02270) recU 415820..416416 (-) 597 WP_000248785.1 Holliday junction resolvase RecU Machinery gene
  ODS73_RS02275 (ODS73_02275) - 416482..417009 (+) 528 WP_000179547.1 DUF1273 domain-containing protein -
  ODS73_RS02280 (ODS73_02280) gpsB 417079..417408 (+) 330 WP_000146522.1 cell division regulator GpsB -
  ODS73_RS02290 (ODS73_02290) - 417894..419051 (+) 1158 WP_000711385.1 class I SAM-dependent RNA methyltransferase -
  ODS73_RS02295 (ODS73_02295) mapZ 419064..420458 (+) 1395 WP_000039254.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23153.57 Da        Isoelectric Point: 9.8515

>NTDB_id=640086 ODS73_RS02270 WP_000248785.1 415820..416416(-) (recU) [Streptococcus pneumoniae strain BM6001]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYHGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=640086 ODS73_RS02270 WP_000248785.1 415820..416416(-) (recU) [Streptococcus pneumoniae strain BM6001]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATCATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49