Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ODS73_RS00585 Genome accession   NZ_CP107038
Coordinates   91203..91973 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain BM6001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 86203..96973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS00565 (ODS73_00565) - 88168..88605 (+) 438 WP_001862441.1 CoA-binding protein -
  ODS73_RS00570 (ODS73_00570) - 88646..88849 (+) 204 WP_050091241.1 hypothetical protein -
  ODS73_RS00575 (ODS73_00575) - 88878..89888 (-) 1011 WP_000009157.1 YeiH family protein -
  ODS73_RS00580 (ODS73_00580) - 90037..91206 (+) 1170 WP_277777596.1 pyridoxal phosphate-dependent aminotransferase -
  ODS73_RS00585 (ODS73_00585) recO 91203..91973 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  ODS73_RS00590 (ODS73_00590) plsX 91970..92962 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  ODS73_RS00595 (ODS73_00595) - 92968..93201 (+) 234 WP_000136447.1 acyl carrier protein -
  ODS73_RS00600 (ODS73_00600) - 93238..93537 (+) 300 Protein_115 transposase family protein -
  ODS73_RS00605 (ODS73_00605) blpU 93740..93970 (+) 231 WP_001093071.1 bacteriocin-like peptide BlpU -
  ODS73_RS00610 (ODS73_00610) - 93973..94098 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  ODS73_RS00615 (ODS73_00615) comA 94685..96838 (+) 2154 WP_000668280.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=640075 ODS73_RS00585 WP_000616164.1 91203..91973(+) (recO) [Streptococcus pneumoniae strain BM6001]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=640075 ODS73_RS00585 WP_000616164.1 91203..91973(+) (recO) [Streptococcus pneumoniae strain BM6001]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGGCTCAGTTACATCGAGGACTATCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992