Detailed information NTG0640058

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA19_RS25870
• Genome accession: NZ_CP107029
• Coordinates: 5526058..5527062 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5521058..5532062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA19_RS25855 (PALA19_05122)	-	5521541..5522548 (+)	1008	WP_003092265.1	TolB family protein	-
PALA19_RS25860 (PALA19_05123)	mutS	5522674..5525241 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA19_RS25865 (PALA19_05124)	fdxA	5525308..5525631 (+)	324	WP_003119354.1	ferredoxin FdxA	-
PALA19_RS25870 (PALA19_05125)	rpoS	5526058..5527062 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA19_RS25875 (PALA19_05126)	-	5527167..5528060 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA19_RS25880 (PALA19_05127)	-	5528106..5528741 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA19_RS25885 (PALA19_05128)	surE	5528774..5529523 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA19_RS25890 (PALA19_05129)	truD	5529511..5530578 (-)	1068	WP_076938863.1	tRNA pseudouridine(13) synthase TruD	-
PALA19_RS25895 (PALA19_05130)	ispF	5530575..5531048 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA19_RS25900 (PALA19_05131)	fghA	5531119..5531970 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=640058 PALA19_RS25870 WP_003113871.1 5526058..5527062(-) (rpoS) [Pseudomonas aeruginosa strain PALA19]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=640058 PALA19_RS25870 WP_003113871.1 5526058..5527062(-) (rpoS) [Pseudomonas aeruginosa strain PALA19]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653