Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LWC06_RS00585 Genome accession   NZ_CP090006
Coordinates   118017..119390 (+) Length   457 a.a.
NCBI ID   WP_233879995.1    Uniprot ID   -
Organism   Virgibacillus halodenitrificans strain ASH15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 113017..124390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWC06_RS00565 - 113128..113595 (+) 468 WP_019378981.1 CtsR family transcriptional regulator -
  LWC06_RS00570 - 113609..114157 (+) 549 WP_019378982.1 UvrB/UvrC motif-containing protein -
  LWC06_RS00575 - 114154..115218 (+) 1065 WP_060681874.1 protein arginine kinase -
  LWC06_RS00580 clpC 115236..117662 (+) 2427 WP_019378984.1 ATP-dependent protease ATP-binding subunit ClpC -
  LWC06_RS00585 radA 118017..119390 (+) 1374 WP_233879995.1 DNA repair protein RadA Machinery gene
  LWC06_RS00590 - 119634..120731 (+) 1098 WP_019375558.1 PIN/TRAM domain-containing protein -
  LWC06_RS00595 gltX 120934..122403 (+) 1470 WP_071648023.1 glutamate--tRNA ligase -
  LWC06_RS00600 cysE 122848..123516 (+) 669 WP_160949713.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49861.29 Da        Isoelectric Point: 6.9546

>NTDB_id=640052 LWC06_RS00585 WP_233879995.1 118017..119390(+) (radA) [Virgibacillus halodenitrificans strain ASH15]
MAKRKTKYVCQECGYESAKWMGKCPGCNNWNTLVEEVATTGGRGNHTFNVGGKPAGKPESITSIESQKEPRITTTMQEFN
RVLGGGIVLGSLVLIGGDPGIGKSTLLLQISSQLAEKQLPVLYISGEESTRQTKLRADRLGIKADQLYVLAETNLFDIAK
QIEEVKPSLVVVDSIQTVYREEVTSAPGSVSQVRESTSELMKIAKTNGIPIFIVGHVTKEGAIAGPRLLEHMVDAVLYFE
GERHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVMNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPSAFG
NPRRMATGIDNNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAVAVSIASSFRDQPTNPEDIFVGEVGLTG
EIRRVSRIEQRVQEAAKLGFKRVICPKNNLEGWTIPKNIEVVGVSTVQEALDIGVSR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=640052 LWC06_RS00585 WP_233879995.1 118017..119390(+) (radA) [Virgibacillus halodenitrificans strain ASH15]
TTGGCAAAAAGAAAAACAAAGTATGTATGTCAAGAATGTGGTTATGAATCAGCTAAATGGATGGGGAAATGTCCGGGATG
TAACAACTGGAATACGTTGGTGGAAGAAGTTGCAACAACTGGCGGGCGAGGTAACCATACATTCAATGTTGGTGGAAAAC
CTGCAGGGAAACCAGAAAGTATTACTTCCATTGAATCACAAAAGGAACCGAGAATTACTACGACCATGCAGGAATTTAAC
CGGGTGCTTGGGGGCGGAATTGTTCTGGGCTCTCTTGTATTAATTGGTGGGGACCCTGGGATTGGGAAATCTACCTTGCT
ACTTCAGATTTCTTCCCAATTGGCAGAGAAGCAATTACCAGTTCTTTATATATCGGGCGAGGAATCTACAAGACAAACAA
AGCTACGTGCCGATCGGTTAGGAATTAAGGCTGATCAGCTATATGTCCTTGCTGAAACGAACTTATTCGATATCGCTAAG
CAGATTGAAGAAGTAAAGCCTTCTCTAGTAGTTGTCGATTCGATCCAAACAGTTTATCGAGAAGAGGTAACAAGCGCGCC
AGGAAGTGTTTCACAAGTTCGAGAGTCTACAAGTGAATTGATGAAAATAGCGAAAACAAACGGAATACCAATTTTTATTG
TTGGTCATGTTACAAAGGAGGGCGCAATTGCTGGCCCGCGCTTATTGGAACACATGGTGGATGCAGTCCTATATTTTGAA
GGGGAGCGGCACCATACCTACCGTATCCTGAGGGGAGTAAAGAATCGTTTCGGAAGTACAAACGAAATGGGGATTTTTGA
AATGAAAGAGGAAGGGCTTCGTGAAGTAATGAATCCTTCTGAAATTTTTCTGGAGGAAAGATCTCAAGGAGCTGCTGGCT
CTACCGTTGTAGCTTCTATGGAAGGAACGAGACCTGTGTTGGTAGAAATTCAGGCTTTAATTTCTCCTTCCGCGTTTGGT
AATCCAAGAAGGATGGCTACTGGCATTGATAATAATCGCGTCCCTTTATTAATGGCTGTACTGGAAAAAAGAGTAGGGCT
TATGCTGCAAAATCAGGATGCATATATAAAAGTAGCTGGCGGAGTTAAATTAGATGAGCCGGCTATTGACTTGGCAGTAG
CAGTGAGTATTGCTTCAAGCTTTAGGGATCAACCTACGAATCCTGAAGATATATTCGTTGGTGAAGTAGGATTAACAGGT
GAAATAAGAAGAGTATCCCGAATTGAACAACGTGTTCAAGAAGCTGCAAAACTAGGATTTAAACGTGTGATATGCCCAAA
GAATAATCTTGAAGGCTGGACGATACCGAAGAATATTGAAGTAGTTGGTGTTAGTACGGTGCAGGAAGCACTGGATATAG
GTGTGAGCAGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-429)

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.67

99.344

0.742
  radA Streptococcus pneumoniae Rx1

62.528

98.687

0.617
  radA Streptococcus pneumoniae D39

62.528

98.687

0.617
  radA Streptococcus pneumoniae R6

62.528

98.687

0.617
  radA Streptococcus pneumoniae TIGR4

62.528

98.687

0.617
  radA Streptococcus mitis NCTC 12261

62.528

98.687

0.617
  radA Streptococcus mitis SK321

62.306

98.687

0.615