Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LV716_RS09330 Genome accession   NZ_CP090004
Coordinates   2106941..2108302 (-) Length   453 a.a.
NCBI ID   WP_163417472.1    Uniprot ID   -
Organism   Flagellimonas sp. HMM57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2101941..2113302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV716_RS09310 (LV716_09310) - 2103844..2104407 (-) 564 WP_163417468.1 cysteine hydrolase family protein -
  LV716_RS09315 (LV716_09315) - 2104430..2104945 (-) 516 WP_163417469.1 hypothetical protein -
  LV716_RS09320 (LV716_09320) - 2105071..2105835 (+) 765 WP_163417470.1 exodeoxyribonuclease III -
  LV716_RS09325 (LV716_09325) - 2105898..2106938 (+) 1041 WP_163417471.1 NADP(H)-dependent aldo-keto reductase -
  LV716_RS09330 (LV716_09330) radA 2106941..2108302 (-) 1362 WP_163417472.1 DNA repair protein RadA Machinery gene
  LV716_RS09335 (LV716_09335) - 2108551..2109693 (-) 1143 WP_163417473.1 alpha/beta hydrolase -
  LV716_RS09340 (LV716_09340) - 2109726..2110688 (-) 963 WP_163417474.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LV716_RS09345 (LV716_09345) panD 2110691..2111041 (-) 351 WP_163417475.1 aspartate 1-decarboxylase -
  LV716_RS09350 (LV716_09350) panC 2111055..2111903 (-) 849 WP_163417476.1 pantoate--beta-alanine ligase -
  LV716_RS09355 (LV716_09355) - 2112006..2112815 (+) 810 WP_163417477.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49770.39 Da        Isoelectric Point: 7.5716

>NTDB_id=640026 LV716_RS09330 WP_163417472.1 2106941..2108302(-) (radA) [Flagellimonas sp. HMM57]
MAKTKTTFFCQNCGAQYPKWVGQCSSCKQWNTIVEEVIQKEEKKNWRSESNTIKKIATPLRVAEINNEKEIRLDAQNQEF
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQIALKLAYKTLYVSGEESQKQIKMRADRIHPNSETCYILTETKTQNIFQQI
GALEPDLVVIDSIQTLHTDYIESAAGSISQIRECTAELIKFAKESSTPVILVGHITKDGNIAGPKILEHMVDTVLQFEGD
RNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLISKNEEDLSGTAIAATVEGMRPLLIEIQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVLAAILSSNADIPIEKGTCFAAEVGLAGEI
RPVQRVDQRILEAEKLGFSTIYVSKSNKIGIKNTTIRLRLVSKIEDVVNVLFL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=640026 LV716_RS09330 WP_163417472.1 2106941..2108302(-) (radA) [Flagellimonas sp. HMM57]
ATGGCAAAGACCAAAACGACTTTTTTCTGTCAAAACTGTGGTGCTCAATATCCCAAATGGGTGGGGCAATGTTCATCTTG
CAAACAGTGGAATACCATTGTTGAAGAAGTCATTCAAAAAGAAGAAAAGAAAAACTGGAGAAGCGAATCCAACACAATAA
AAAAAATTGCTACTCCTTTGCGTGTCGCAGAAATCAACAACGAAAAAGAAATTCGATTAGATGCCCAGAATCAAGAGTTC
AACAGGGTACTTGGCGGAGGTATTGTACCTGGTTCATTGATTCTTTTGGGAGGGGAACCCGGTATTGGAAAAAGTACGTT
GCTTTTGCAAATAGCTTTGAAGCTCGCATACAAGACACTGTATGTTTCCGGTGAAGAAAGCCAGAAGCAGATAAAAATGC
GAGCGGACCGCATTCATCCCAATAGCGAAACTTGCTATATCCTTACCGAGACCAAAACGCAGAACATCTTTCAACAAATA
GGTGCTTTGGAACCAGATTTGGTGGTTATCGATTCCATTCAAACCCTTCATACCGATTATATTGAATCCGCCGCAGGTAG
TATCTCACAGATACGGGAATGTACCGCAGAACTAATAAAATTTGCAAAAGAAAGTAGTACTCCTGTTATTTTGGTGGGTC
ACATCACCAAAGATGGGAACATAGCCGGACCTAAAATCTTGGAGCATATGGTGGATACTGTTCTTCAGTTTGAAGGCGAC
CGTAACTATGTATACCGAATTCTCCGTTCGCTTAAAAATCGATTTGGCTCTACGGCAGAATTGGGAATCTATGAAATGCA
GGGGAGTGGCTTGCGTGAAGTAAACAATCCATCCGAAGTATTGATTTCCAAGAATGAAGAAGACCTTAGCGGAACAGCTA
TAGCCGCAACGGTAGAAGGCATGCGACCCCTTCTTATCGAAATACAGGCTTTAGTGAGTACTGCGGTTTACGGAACCCCG
CAACGTTCTGCAACCGGATTCAACGCCAAACGATTGAACATGCTTTTGGCCGTTTTGGAAAAAAGAGCAGGTTTCAAATT
AGGGGCAAAAGATGTGTTCCTAAACATTACGGGGGGAATATCTGTAGATGATCCCGCGATTGACTTGGCCGTATTGGCCG
CCATTCTATCCAGCAATGCGGACATTCCCATTGAAAAAGGGACGTGTTTTGCCGCAGAGGTGGGCTTGGCAGGGGAAATA
CGCCCTGTACAGCGGGTAGACCAACGCATCTTAGAAGCAGAAAAACTGGGTTTTTCTACAATCTATGTTTCCAAAAGCAA
CAAAATCGGAATTAAAAATACTACGATTCGACTAAGACTGGTCTCCAAAATTGAAGATGTGGTAAACGTATTGTTCCTCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.352

100

0.486
  radA Streptococcus mitis NCTC 12261

48.352

100

0.486
  radA Streptococcus mitis SK321

48.352

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.352

100

0.486
  radA Streptococcus pneumoniae D39

48.352

100

0.486
  radA Streptococcus pneumoniae R6

48.352

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

50.465

94.923

0.479