NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LV704_RS10235	Genome accession	NZ_CP090003
Coordinates	2245732..2247090 (-)	Length	452 a.a.
NCBI ID	WP_163420421.1	Uniprot ID	-
Organism	Flagellimonas sp. CMM7
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2240732..2252090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LV704_RS10215 (LV704_10215)	-	2240999..2241517 (-)	519	WP_163420428.1	hypothetical protein	-
LV704_RS10220 (LV704_10220)	-	2241645..2242409 (+)	765	WP_163420426.1	exodeoxyribonuclease III	-
LV704_RS10225 (LV704_10225)	-	2242472..2243512 (+)	1041	WP_163420424.1	aldo/keto reductase	-
LV704_RS10230 (LV704_10230)	-	2243518..2245653 (-)	2136	WP_233782018.1	PQQ-binding-like beta-propeller repeat protein	-
LV704_RS10235 (LV704_10235)	radA	2245732..2247090 (-)	1359	WP_163420421.1	DNA repair protein RadA	Machinery gene
LV704_RS10240 (LV704_10240)	-	2247169..2248311 (-)	1143	WP_163420419.1	alpha/beta hydrolase	-
LV704_RS10245 (LV704_10245)	-	2248339..2249304 (-)	966	WP_163420418.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
LV704_RS10250 (LV704_10250)	panD	2249307..2249657 (-)	351	WP_163420416.1	aspartate 1-decarboxylase	-
LV704_RS10255 (LV704_10255)	panC	2249671..2250519 (-)	849	WP_163420414.1	pantoate--beta-alanine ligase	-
LV704_RS10260 (LV704_10260)	-	2250622..2251431 (+)	810	WP_163420412.1	glycogen/starch synthase	-

Sequence

Protein

Download Length: 452 a.a. Molecular weight: 49369.82 Da Isoelectric Point: 6.9434

                                >NTDB_id=640016 LV704_RS10235 WP_163420421.1 2245732..2247090(-) (radA) [Flagellimonas sp. CMM7]

MAKIKTAFFCQNCGAQHAKWVGQCSSCKQWNTIVEEVVQKEEKKGWKSSSNSLKKASTPLRVSEITNEKEIRLDTQDQEF

NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLAYKTLYVSGEESQKQIKMRADRIHPNSENCFILTETKTQNIFQQI

AAIEPDLVVIDSIQTLHTDYIESAAGSISQIRESTAELIKFAKESSTPVILVGHITKDGTIAGPKILEHMVDTVLQFEGD

RNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLISKNDEDLSGTAIAATVEGMRPLLIEIQALVSTAVYGTP

QRSATGFNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISVDDPAIDLAVMAAILSSNADIPIEKGICFAAEVGLAGEI

RPVQRVDQRILEAEKLGFTQIYVSKSNKIGLKNTSIQIQLVAKIEDLVSSLF

Nucleotide

Download Length: 1359 bp

                                >NTDB_id=640016 LV704_RS10235 WP_163420421.1 2245732..2247090(-) (radA) [Flagellimonas sp. CMM7]

ATGGCTAAAATTAAAACTGCTTTCTTTTGTCAAAATTGTGGCGCTCAGCATGCTAAGTGGGTTGGGCAATGTTCTTCTTG

CAAACAATGGAATACCATTGTGGAAGAAGTAGTTCAAAAAGAAGAGAAAAAGGGTTGGAAAAGCAGCTCTAATTCACTAA

AAAAAGCTTCAACACCTTTACGAGTTTCTGAAATAACCAACGAAAAGGAAATTCGATTAGATACCCAAGATCAAGAATTT

AATAGAGTTTTGGGCGGGGGACTTGTACCTGGTTCTTTAACCTTATTGGGAGGTGAACCTGGCATAGGAAAAAGCACCTT

GCTACTACAAATAGCACTTAAACTAGCATACAAAACCCTGTATGTGTCCGGTGAGGAAAGCCAGAAACAGATAAAAATGC

GTGCAGACCGCATTCACCCCAATAGTGAAAATTGCTTTATCCTTACCGAAACCAAAACACAAAATATATTTCAGCAAATA

GCTGCCATAGAACCAGACTTGGTAGTTATTGATTCTATCCAAACATTACATACTGATTATATTGAATCTGCCGCTGGAAG

CATCTCACAAATAAGGGAGAGCACCGCCGAACTTATCAAATTTGCCAAGGAAAGTAGCACTCCGGTAATTTTGGTAGGTC

ATATTACTAAAGACGGTACTATAGCTGGACCCAAAATATTGGAGCATATGGTAGATACTGTGCTTCAGTTTGAAGGGGAT

CGCAATTATGTATACCGGATTCTTCGTTCACTTAAAAACAGATTTGGTTCCACAGCAGAATTGGGTATTTACGAAATGCA

AGGAAGTGGGCTACGTGAAGTGAACAATCCATCGGAAGTACTGATTTCAAAAAACGATGAAGACCTAAGCGGAACAGCAA

TTGCCGCTACAGTTGAAGGCATGAGGCCTTTACTGATTGAAATACAGGCTTTGGTGAGCACTGCTGTTTATGGCACTCCA

CAACGCTCGGCAACTGGGTTCAATGCTAAAAGATTAAATATGCTTTTAGCCGTTCTTGAAAAAAGAGCAGGTTTTAAACT

AGCTGCAAAGGATGTTTTTCTAAATATAACAGGGGGAATCTCTGTAGACGATCCGGCAATTGACTTGGCCGTTATGGCCG

CAATTCTATCCAGTAATGCCGACATCCCTATTGAAAAAGGCATTTGTTTTGCTGCAGAAGTGGGATTGGCAGGAGAAATA

AGACCTGTACAACGCGTAGATCAGCGCATTCTGGAAGCTGAAAAATTAGGTTTTACCCAAATTTATGTTTCCAAGAGCAA

CAAAATTGGTCTTAAAAACACTTCCATTCAAATACAATTGGTTGCCAAAATAGAAGATTTGGTAAGCTCACTATTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.123	100	0.496
radA	Streptococcus mitis SK321	48.352	100	0.487
radA	Streptococcus mitis NCTC 12261	48.352	100	0.487
radA	Streptococcus pneumoniae Rx1	48.352	100	0.487
radA	Streptococcus pneumoniae D39	48.352	100	0.487
radA	Streptococcus pneumoniae R6	48.352	100	0.487
radA	Streptococcus pneumoniae TIGR4	48.352	100	0.487

Detailed information NTG0640016