Detailed information NTG0639926

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: LS684_RS18680
• Genome accession: NZ_CP089997
• Coordinates: 3693771..3695150 (-)
• Length: 459 a.a.
• NCBI ID: WP_233808333.1
• Uniprot ID: -
• Organism: Cytobacillus spongiae strain CY-G
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3688771..3700150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LS684_RS18670 (LS684_18670)	-	3692570..3692998 (-)	429	WP_233808331.1	TIGR03826 family flagellar region protein	-
LS684_RS18675 (LS684_18675)	-	3693079..3693774 (-)	696	WP_233808332.1	ComF family protein	-
LS684_RS18680 (LS684_18680)	comFA	3693771..3695150 (-)	1380	WP_233808333.1	DEAD/DEAH box helicase	Machinery gene
LS684_RS18685 (LS684_18685)	-	3695405..3696244 (-)	840	WP_233808334.1	DegV family protein	-
LS684_RS18690 (LS684_18690)	-	3696520..3697203 (-)	684	WP_233808336.1	response regulator transcription factor	-
LS684_RS18695 (LS684_18695)	-	3697234..3698382 (-)	1149	WP_233808337.1	sensor histidine kinase	-
LS684_RS18700 (LS684_18700)	-	3698814..3699452 (+)	639	WP_233808339.1	YigZ family protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 52218.77 Da
• Isoelectric Point: 9.6136

>NTDB_id=639926 LS684_RS18680 WP_233808333.1 3693771..3695150(-) (comFA) [Cytobacillus spongiae strain CY-G]
MESTQPNIELQQLLIGKQLLLDELPFSKELLQQHQHHLIFREGISLENKAPKCNRCGNQHPEWLATFPCSRCKKECTYCR
KCIKMGRVSTCTPLVSWNGPAISLSVTPKLDWSGTLSIGQKVASEQVVKAIKQDEDLLVWAVCGAGKTEVLFQGIEEALL
SNKRVCIATPRTDVVLELTPRIKQVFPHLKIASLYGGSDDRHHYSPLTISTTHQLMRFYQAFDVIILDEVDAFPYSVEES
LHYAVHQARKPVSSMIYLTATPNQKWQRDCQLGKRPYVTIPARYHRHPLPVPQFVWCGNWEKKLKKGKLPGNVLRWLQNR
IHSKKQTLLFLPKIDLMEKVLLILQTIDPTIQSVHAEDPDRKEKVNKMRNKEISLLLTTTILERGVTFPNVDVAVLGAEN
HIFTESALVQIAGRVGRSFAYPSGNITFFHYGKTTAIVRARKQIIEMNHQAVKRGLVDV

Nucleotide

• Length: 1380 bp

>NTDB_id=639926 LS684_RS18680 WP_233808333.1 3693771..3695150(-) (comFA) [Cytobacillus spongiae strain CY-G]
TTGGAATCAACACAACCCAATATCGAACTTCAACAACTATTAATCGGAAAGCAACTGCTTCTAGATGAGCTTCCTTTTAG
TAAAGAACTATTACAACAGCACCAACACCATCTTATTTTCCGCGAAGGAATCTCCTTAGAGAATAAAGCCCCCAAGTGCA
ATCGCTGTGGAAACCAACACCCCGAATGGCTTGCCACCTTTCCATGTTCACGATGTAAAAAAGAGTGTACCTATTGCCGA
AAATGCATTAAGATGGGCCGAGTGAGTACATGTACTCCGTTAGTTAGCTGGAACGGACCAGCCATTTCACTATCTGTCAC
CCCAAAGCTAGACTGGAGCGGGACCCTTTCTATTGGGCAAAAAGTCGCCTCCGAGCAAGTAGTGAAAGCCATTAAACAAG
ACGAAGATCTTCTAGTTTGGGCAGTGTGTGGAGCTGGGAAAACAGAGGTATTGTTTCAAGGGATTGAAGAGGCATTGCTG
TCTAACAAACGGGTATGTATCGCCACTCCGAGAACAGATGTAGTACTCGAGCTTACCCCAAGAATCAAGCAAGTATTCCC
CCATTTGAAAATAGCTTCACTTTACGGTGGAAGTGACGATCGTCATCATTATTCACCCCTTACGATATCAACAACCCATC
AACTGATGAGATTTTATCAAGCCTTCGATGTCATTATTTTAGATGAAGTAGATGCTTTCCCATACTCAGTAGAAGAATCC
CTACATTACGCAGTCCATCAAGCACGAAAACCAGTTTCCTCGATGATCTATTTAACCGCTACCCCAAATCAGAAATGGCA
AAGGGACTGTCAGCTTGGTAAACGACCATATGTCACAATTCCTGCCCGCTATCATCGCCATCCACTACCAGTGCCTCAAT
TCGTGTGGTGTGGAAATTGGGAGAAAAAATTGAAAAAGGGAAAGCTTCCCGGAAATGTCCTTCGCTGGCTCCAAAATCGA
ATTCACTCGAAAAAGCAAACCCTCCTATTCCTGCCAAAAATAGATCTCATGGAAAAGGTATTGCTCATCCTCCAAACCAT
CGATCCGACAATTCAATCTGTTCATGCTGAAGATCCTGATCGCAAAGAAAAAGTGAATAAAATGAGAAACAAGGAAATTT
CATTATTGCTGACCACGACAATTCTTGAGAGGGGCGTCACTTTTCCGAATGTAGATGTAGCTGTACTAGGGGCTGAGAAT
CATATATTCACTGAAAGTGCCCTAGTTCAAATCGCTGGAAGGGTAGGGCGCAGCTTCGCCTATCCATCAGGGAATATTAC
CTTTTTTCATTATGGGAAGACAACCGCCATCGTTCGAGCTAGGAAACAAATTATTGAAATGAATCATCAAGCTGTAAAAA
GGGGGCTAGTAGACGTATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (119-263)

• Helicase conserved C-terminal domain (Helicase_C) (320-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50	98.475	0.492