Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LS684_RS14125 Genome accession   NZ_CP089997
Coordinates   2784004..2785692 (-) Length   562 a.a.
NCBI ID   WP_233806857.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2779004..2790692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS14110 (LS684_14110) - 2780875..2781093 (-) 219 WP_233806854.1 hypothetical protein -
  LS684_RS14115 (LS684_14115) spo0A 2781504..2782295 (-) 792 WP_233806855.1 sporulation transcription factor Spo0A -
  LS684_RS14120 (LS684_14120) spoIVB 2782587..2783876 (-) 1290 WP_233806856.1 SpoIVB peptidase -
  LS684_RS14125 (LS684_14125) recN 2784004..2785692 (-) 1689 WP_233806857.1 DNA repair protein RecN Machinery gene
  LS684_RS14130 (LS684_14130) argR 2785710..2786159 (-) 450 WP_233806858.1 transcriptional regulator ArgR -
  LS684_RS14135 (LS684_14135) - 2786414..2787256 (-) 843 WP_233806859.1 TlyA family RNA methyltransferase -
  LS684_RS14140 (LS684_14140) dxs 2787261..2789153 (-) 1893 WP_233806860.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LS684_RS14145 (LS684_14145) - 2789166..2789765 (-) 600 WP_233806861.1 hypothetical protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 64067.68 Da        Isoelectric Point: 5.0141

>NTDB_id=639914 LS684_RS14125 WP_233806857.1 2784004..2785692(-) (recN) [Cytobacillus spongiae strain CY-G]
MLSELSIKNFAIIEALSISFEKGLTVLTGETGAGKSIIIDALHLLVGGRGSSEFVRHGEARAEIEGLFQIDQPSHPSFEK
AKEFGIEIEEGMVVLRRDISQSGKSVCRINGKLVTISTLREFGSTLVDIHGQHEHQELMDEANHLLLLDQFGGQEIEQAT
EEYRAIYRAYEQTMKKLNQLNENEQQMAHRLDLIQFQWDEIEKAQLKINEDQDLLEEKKRLSNYERIYDALKVGYSSLSG
EQKGLDWIGLVMSHLETASDIDEQYKDLSEAVSNSFYLLEDTARTLRNELDRLEYDPQRLNEIEERLNEINQLKRKYGKS
IEEILEYASKIEEEIETLQNKEVHIDHLQKEIQSLKKDLLVEGKELTTSRKKWAQLLTDSIHKELKELYMEKTVFEINFH
EQIDVFSKNGMDKIEFYLSTNPGEPLKPMSKIASGGELSRIMLAMKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSTDSQVLCISHLPQVAAMADTHLYIAKDTKEGRTKTTVASLTNHEKIREIGRMISGVEITDLTKQHAKELLELADDIK
KK

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=639914 LS684_RS14125 WP_233806857.1 2784004..2785692(-) (recN) [Cytobacillus spongiae strain CY-G]
TTGTTAAGTGAGCTATCAATAAAAAATTTCGCTATTATTGAAGCCCTCTCTATTTCGTTTGAGAAGGGCTTAACTGTATT
AACGGGTGAAACAGGTGCAGGAAAATCGATTATTATTGATGCACTACATTTGCTTGTTGGTGGGAGAGGCTCTTCAGAGT
TTGTACGTCACGGTGAAGCACGTGCAGAAATTGAGGGCCTTTTTCAAATTGACCAGCCGTCACATCCTAGCTTTGAGAAA
GCAAAGGAATTTGGAATAGAAATCGAAGAAGGAATGGTCGTTTTAAGGCGGGACATTTCTCAATCCGGAAAAAGTGTTTG
TCGAATTAATGGAAAGCTTGTAACCATCTCAACCCTACGGGAATTCGGTAGTACACTCGTCGATATTCATGGTCAGCATG
AGCATCAGGAGCTTATGGATGAGGCTAATCATTTATTGCTTTTAGACCAGTTTGGAGGACAAGAGATCGAACAAGCAACA
GAGGAATACAGAGCAATCTATCGTGCCTATGAGCAAACGATGAAAAAGCTAAATCAATTAAATGAGAATGAACAACAAAT
GGCCCACCGCCTTGATTTGATTCAATTCCAATGGGATGAAATTGAAAAAGCCCAGTTAAAAATAAATGAAGACCAGGATT
TGCTTGAAGAAAAGAAACGATTATCTAACTATGAGAGAATATATGATGCGTTAAAGGTCGGCTATTCCTCATTAAGTGGA
GAGCAAAAAGGTTTAGATTGGATTGGTCTTGTCATGAGCCACTTAGAGACAGCCTCTGACATAGATGAACAATACAAGGA
TCTATCAGAAGCTGTGTCTAACAGTTTTTACCTATTGGAGGACACGGCACGTACGCTAAGAAATGAGCTTGATCGATTGG
AATATGACCCCCAACGTTTGAATGAAATTGAAGAACGGCTTAATGAAATAAACCAATTGAAGCGTAAATACGGCAAAAGC
ATCGAGGAAATCCTAGAATATGCTTCCAAAATTGAAGAAGAGATTGAAACCCTTCAAAACAAAGAAGTTCATATAGATCA
TTTGCAAAAAGAAATTCAGAGCTTAAAAAAAGATTTGCTTGTAGAAGGGAAAGAGTTGACTACTTCTCGAAAAAAATGGG
CACAATTACTAACAGATTCGATCCATAAAGAGTTAAAAGAGCTGTATATGGAAAAGACTGTATTTGAGATTAATTTCCAT
GAGCAAATAGATGTTTTTTCAAAAAATGGGATGGATAAAATTGAGTTCTATCTATCAACCAATCCAGGAGAGCCATTAAA
GCCTATGTCGAAAATAGCATCTGGTGGGGAGCTTTCGCGGATTATGCTTGCGATGAAGAGCATTTTTTCAAAACATCAAG
GCGTGACTTCGATTATTTTTGATGAAGTAGATACTGGCGTTAGCGGCCGGGTAGCACAAGCAATTGCAGAAAAAATTCAT
CATGTATCAACGGATTCTCAAGTGCTTTGTATATCTCATCTTCCTCAAGTGGCAGCGATGGCAGACACCCATCTATATAT
TGCAAAGGATACAAAAGAAGGAAGAACGAAAACAACTGTAGCTTCGTTGACGAATCATGAAAAAATACGAGAAATAGGCA
GAATGATTTCTGGAGTGGAAATCACCGATCTTACAAAACAGCATGCAAAGGAATTGCTGGAATTAGCAGATGATATTAAG
AAAAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.806

100

0.633