Detailed information NTG0639907

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OFB12_RS04940
• Genome accession: NZ_CP107005
• Coordinates: 1020865..1021857 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain SY22A1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1015865..1026857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFB12_RS04910 (OFB12_04870)	ispD	1015926..1016636 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OFB12_RS04915 (OFB12_04875)	ispF	1016636..1017115 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OFB12_RS04920 (OFB12_04880)	truD	1017112..1018161 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
OFB12_RS04925 (OFB12_04885)	surE	1018142..1018903 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OFB12_RS04930 (OFB12_04890)	pcm	1018897..1019523 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OFB12_RS04935 (OFB12_04895)	nlpD	1019708..1020802 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
OFB12_RS04940 (OFB12_04900)	rpoS	1020865..1021857 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
OFB12_RS04945 (OFB12_04905)	ygbN	1021951..1023315 (-)	1365	WP_000104441.1	GntP family transporter	-
OFB12_RS04950 (OFB12_04910)	ygbM	1023404..1024180 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
OFB12_RS04955 (OFB12_04915)	ygbL	1024185..1024823 (-)	639	WP_001278991.1	aldolase	-
OFB12_RS04960 (OFB12_04920)	otnK	1024915..1026081 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=639907 OFB12_RS04940 WP_000081588.1 1020865..1021857(+) (rpoS) [Escherichia coli strain SY22A1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=639907 OFB12_RS04940 WP_000081588.1 1020865..1021857(+) (rpoS) [Escherichia coli strain SY22A1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715