Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LS684_RS06060 Genome accession   NZ_CP089997
Coordinates   1163889..1164848 (+) Length   319 a.a.
NCBI ID   WP_233810719.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158889..1169848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS06045 (LS684_06045) - 1161557..1161745 (-) 189 WP_233810716.1 YjzD family protein -
  LS684_RS06050 (LS684_06050) - 1161946..1162686 (+) 741 WP_233810717.1 hydrolase -
  LS684_RS06055 (LS684_06055) - 1162752..1163552 (+) 801 WP_233810718.1 GDP-mannose 4,6-dehydratase -
  LS684_RS06060 (LS684_06060) med 1163889..1164848 (+) 960 WP_233810719.1 BMP family ABC transporter substrate-binding protein Regulator
  LS684_RS06065 (LS684_06065) comZ 1164866..1165060 (+) 195 WP_233810720.1 ComZ family protein Regulator
  LS684_RS06070 (LS684_06070) - 1165331..1165675 (-) 345 WP_233810721.1 hypothetical protein -
  LS684_RS06075 (LS684_06075) - 1165910..1166842 (+) 933 WP_233810722.1 beta-ketoacyl-ACP synthase III -
  LS684_RS06080 (LS684_06080) fabF 1166898..1168139 (+) 1242 WP_233810723.1 beta-ketoacyl-ACP synthase II -
  LS684_RS06085 (LS684_06085) - 1168483..1169268 (+) 786 WP_233810724.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35908.24 Da        Isoelectric Point: 4.2012

>NTDB_id=639900 LS684_RS06060 WP_233810719.1 1163889..1164848(+) (med) [Cytobacillus spongiae strain CY-G]
MHRILYRSVFVVMCLLLVAACGQPMSAGNIKKVGLLVPETVNDQVWGTKGYKGLLKIQSKFDVDVYYKEGINTQPIAERA
IREYAQKGVNLIFGHGNEYAVYFNAIADDYPDIHFVSFNGNATKENTTSLNFKAYAMGFFGGMVAANMSNSERVGIIAAY
EWQPEIEGFYDGAFFENENVNVDIQYVGHWDHDEKALQLLDNMLENEIDVVYPAGDGYNVPVIEKVKENGLYAIGYISDQ
SDLGKSTVLTSTIQHVDTLYEVVAEKFQNGDLDSGNLFFDFQDDVISLGEFSPDIDYQFKEQINQYIQVYKETGQLPNE

Nucleotide


Download         Length: 960 bp        

>NTDB_id=639900 LS684_RS06060 WP_233810719.1 1163889..1164848(+) (med) [Cytobacillus spongiae strain CY-G]
ATGCATAGGATATTGTACCGTTCGGTGTTTGTAGTAATGTGCCTTCTTTTAGTGGCCGCTTGTGGACAACCTATGTCTGC
AGGAAATATTAAAAAAGTAGGTCTTCTAGTCCCAGAAACGGTAAATGACCAGGTTTGGGGAACAAAGGGTTATAAAGGGT
TATTAAAGATCCAATCGAAATTTGATGTGGATGTCTACTATAAAGAGGGAATTAATACACAACCAATAGCGGAACGAGCC
ATTAGGGAATATGCCCAAAAAGGTGTAAATCTAATCTTTGGTCATGGAAATGAGTATGCTGTCTATTTTAATGCAATAGC
TGATGATTACCCAGATATCCACTTTGTGAGCTTTAATGGAAATGCCACAAAAGAAAATACGACAAGCCTAAATTTTAAGG
CATATGCAATGGGTTTTTTTGGCGGAATGGTAGCAGCCAATATGTCGAATTCGGAAAGGGTGGGGATCATTGCTGCTTAT
GAGTGGCAGCCAGAAATAGAAGGCTTTTATGATGGAGCGTTCTTTGAAAATGAAAACGTTAATGTTGATATCCAATATGT
TGGACATTGGGATCATGACGAAAAGGCGTTGCAATTATTAGATAATATGTTAGAAAATGAAATCGATGTTGTTTACCCTG
CAGGTGATGGGTATAATGTACCTGTCATTGAAAAAGTAAAAGAAAATGGATTGTATGCCATTGGCTATATTTCAGATCAG
TCTGATTTAGGAAAATCAACAGTATTAACTAGCACAATTCAGCATGTTGACACATTATATGAAGTGGTTGCTGAAAAGTT
TCAAAATGGAGACTTGGATTCTGGGAACTTATTTTTTGATTTTCAAGATGATGTCATCTCATTAGGTGAGTTTAGCCCAG
ATATTGATTATCAATTTAAAGAACAAATTAATCAATATATCCAGGTTTACAAAGAAACAGGACAGCTTCCGAATGAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(30-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.229

98.433

0.514