Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   P795_RS16055 Genome accession   NC_023028
Coordinates   3458780..3459106 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii ZW85-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3453780..3464106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P795_RS16035 (P795_15895) - 3453887..3454516 (-) 630 WP_023897400.1 FHA domain-containing protein -
  P795_RS16040 (P795_15900) gspD 3454557..3456827 (-) 2271 WP_004842719.1 type II secretion system secretin GspD -
  P795_RS16045 (P795_15905) - 3456869..3457705 (-) 837 WP_023897402.1 type II secretion system protein N -
  P795_RS16050 (P795_15910) gspN 3457705..3458448 (-) 744 WP_000730343.1 type II secretion system protein N -
  P795_RS16055 (P795_15915) hns 3458780..3459106 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  P795_RS16060 (P795_15920) - 3459301..3459741 (-) 441 WP_043960409.1 thioesterase family protein -
  P795_RS16065 (P795_15925) - 3459749..3460942 (-) 1194 WP_023897404.1 hypothetical protein -
  P795_RS16070 (P795_15930) - 3460952..3461791 (-) 840 WP_001230202.1 hypothetical protein -
  P795_RS16075 (P795_15935) - 3461800..3462567 (-) 768 WP_000897412.1 uroporphyrinogen-III synthase -
  P795_RS16080 (P795_15940) hemC 3462572..3463489 (-) 918 WP_043960454.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=63984 P795_RS16055 WP_000801427.1 3458780..3459106(-) (hns) [Acinetobacter baumannii ZW85-1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=63984 P795_RS16055 WP_000801427.1 3458780..3459106(-) (hns) [Acinetobacter baumannii ZW85-1]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment