Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LKW29_RS24720 Genome accession   NZ_CP089993
Coordinates   4734469..4734753 (-) Length   94 a.a.
NCBI ID   WP_000843035.1    Uniprot ID   A0A6L7HTM5
Organism   Bacillus anthracis strain BF5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4729469..4739753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKW29_RS24685 (LKW29_24685) tmk 4729623..4730249 (+) 627 WP_000677237.1 dTMP kinase -
  LKW29_RS24690 (LKW29_24690) holB 4730285..4731268 (+) 984 WP_000169560.1 DNA polymerase III subunit delta' -
  LKW29_RS24695 (LKW29_24695) - 4731274..4732101 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  LKW29_RS24700 (LKW29_24700) yabA 4732116..4732466 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  LKW29_RS24705 (LKW29_24705) - 4732587..4733327 (+) 741 WP_001055363.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LKW29_RS24710 (LKW29_24710) - 4733314..4733604 (+) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  LKW29_RS24715 (LKW29_24715) rsmI 4733573..4734448 (+) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LKW29_RS24720 (LKW29_24720) abrB 4734469..4734753 (-) 285 WP_000843035.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LKW29_RS24725 (LKW29_24725) metG 4735244..4737226 (+) 1983 WP_000134128.1 methionine--tRNA ligase -
  LKW29_RS24730 (LKW29_24730) - 4737392..4738159 (+) 768 WP_000895823.1 TatD family hydrolase -
  LKW29_RS24735 (LKW29_24735) rnmV 4738374..4738931 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10550.27 Da        Isoelectric Point: 4.7174

>NTDB_id=639808 LKW29_RS24720 WP_000843035.1 4734469..4734753(-) (abrB) [Bacillus anthracis strain BF5]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=639808 LKW29_RS24720 WP_000843035.1 4734469..4734753(-) (abrB) [Bacillus anthracis strain BF5]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATTTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7HTM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851