Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LKW29_RS04980 Genome accession   NZ_CP089993
Coordinates   951146..951748 (-) Length   200 a.a.
NCBI ID   WP_000155594.1    Uniprot ID   Q81SS2
Organism   Bacillus anthracis strain BF5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 946146..956748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKW29_RS04960 (LKW29_04960) dnaD 946471..947178 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  LKW29_RS04965 (LKW29_04965) nth 947194..947841 (+) 648 WP_000933025.1 endonuclease III -
  LKW29_RS04970 (LKW29_04970) - 947845..948363 (+) 519 WP_000442690.1 YpoC family protein -
  LKW29_RS04975 (LKW29_04975) - 948387..951080 (-) 2694 WP_001283117.1 PBP1A family penicillin-binding protein -
  LKW29_RS04980 (LKW29_04980) recU 951146..951748 (-) 603 WP_000155594.1 Holliday junction resolvase RecU Machinery gene
  LKW29_RS04985 (LKW29_04985) - 951852..952877 (+) 1026 WP_000495637.1 DUF2515 domain-containing protein -
  LKW29_RS04990 (LKW29_04990) - 953144..953320 (-) 177 WP_003160383.1 hypothetical protein -
  LKW29_RS04995 (LKW29_04995) - 953406..953648 (+) 243 WP_001252043.1 hypothetical protein -
  LKW29_RS05000 (LKW29_05000) - 953664..954008 (+) 345 WP_000872959.1 YppE family protein -
  LKW29_RS05005 (LKW29_05005) - 954034..954224 (-) 191 Protein_965 YppF family protein -
  LKW29_RS05010 (LKW29_05010) - 954402..954881 (+) 480 WP_000487711.1 YppG family protein -
  LKW29_RS05015 (LKW29_05015) - 955036..955458 (+) 423 WP_000546264.1 CotD family spore coat protein -
  LKW29_RS05020 (LKW29_05020) - 955515..956069 (+) 555 WP_000862924.1 DUF1273 domain-containing protein -
  LKW29_RS05025 (LKW29_05025) gpsB 956167..956505 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5601

>NTDB_id=639779 LKW29_RS04980 WP_000155594.1 951146..951748(-) (recU) [Bacillus anthracis strain BF5]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIITFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=639779 LKW29_RS04980 WP_000155594.1 951146..951748(-) (recU) [Bacillus anthracis strain BF5]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAGGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTACATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81SS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625