Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LUR00_RS01560 Genome accession   NZ_CP089989
Coordinates   301553..302149 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain LZKP00003     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 296553..307149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUR00_RS01545 (LUR00_01545) helD 296761..298815 (-) 2055 WP_102011928.1 DNA helicase IV -
  LUR00_RS01550 (LUR00_01550) - 298940..299386 (+) 447 WP_102011927.1 YccF domain-containing protein -
  LUR00_RS01555 (LUR00_01555) yccS 299404..301539 (+) 2136 WP_102011926.1 YccS family putative transporter -
  LUR00_RS01560 (LUR00_01560) sxy/tfoX 301553..302149 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  LUR00_RS01565 (LUR00_01565) sulA 302498..303007 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LUR00_RS01570 (LUR00_01570) ompA 303360..304430 (+) 1071 WP_002898408.1 porin OmpA -
  LUR00_RS01575 (LUR00_01575) matP 304562..305014 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LUR00_RS01580 (LUR00_01580) - 305200..306957 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=639744 LUR00_RS01560 WP_004150836.1 301553..302149(-) (sxy/tfoX) [Klebsiella pneumoniae strain LZKP00003]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=639744 LUR00_RS01560 WP_004150836.1 301553..302149(-) (sxy/tfoX) [Klebsiella pneumoniae strain LZKP00003]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAAGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51