NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LVW35_RS24730	Genome accession	NZ_CP089985
Coordinates	5405513..5406880 (-)	Length	455 a.a.
NCBI ID	WP_233892415.1	Uniprot ID	-
Organism	Pseudomonas sp. HN11
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5400513..5411880

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVW35_RS24710 (LVW35_24710)	yjiA	5401593..5402552 (-)	960	WP_233892412.1	GTPase	-
LVW35_RS24715 (LVW35_24715)	-	5402705..5402902 (-)	198	WP_016976771.1	YbdD/YjiX family protein	-
LVW35_RS24720 (LVW35_24720)	-	5402918..5404984 (-)	2067	WP_233892413.1	carbon starvation CstA family protein	-
LVW35_RS24725 (LVW35_24725)	-	5405159..5405524 (+)	366	WP_233892414.1	PilZ domain-containing protein	-
LVW35_RS24730 (LVW35_24730)	radA	5405513..5406880 (-)	1368	WP_233892415.1	DNA repair protein RadA	Machinery gene
LVW35_RS24735 (LVW35_24735)	-	5406916..5407455 (-)	540	WP_233892416.1	ankyrin repeat domain-containing protein	-
LVW35_RS24740 (LVW35_24740)	katB	5407515..5409056 (-)	1542	WP_233892417.1	catalase KatB	-
LVW35_RS24745 (LVW35_24745)	mscL	5409344..5409763 (+)	420	WP_186691051.1	large-conductance mechanosensitive channel protein MscL	-
LVW35_RS24750 (LVW35_24750)	-	5409808..5410584 (-)	777	WP_233892418.1	ferredoxin--NADP reductase	-
LVW35_RS24755 (LVW35_24755)	-	5410966..5411676 (+)	711	WP_233892419.1	LuxR family transcriptional regulator	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48757.26 Da Isoelectric Point: 6.8987

                                >NTDB_id=639711 LVW35_RS24730 WP_233892415.1 5405513..5406880(-) (radA) [Pseudomonas sp. HN11]

MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPAGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA

TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=639711 LVW35_RS24730 WP_233892415.1 5405513..5406880(-) (radA) [Pseudomonas sp. HN11]

ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG

CGGTGCCTGGAACACCCTGACTGAAACCATGATCGAAAGCGGCGGTGCCGCGGCCCCTGCAGGACGTGCCGGCTGGACCG

GGCAGCAGGCACAGATCAAGACGTTGGCCGAGGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACCGCTTCCGGCGAGTTG

GACCGGGTGTTGGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCAGGCATCGGTAAATCCACGAT

CCTGCTGCAAACCCTGTGCAGTATCGCCAGCCGTATGCCGGCGCTGTATGTCACCGGCGAAGAATCCCAACAGCAAGTGG

CCATGCGCGCCCGTCGCCTGGGGCTGCCCCAGGATCAACTGCGGGTCATGACCGAAACCTGCATTGAAAGCATCATTGCC

ACGGCACGTATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAGTCGGCACC

GGGCGGCGTGTCCCAGGTGCGTGAAAGTGCGGCGCTGTTGGTGCGATATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG

TGGGCCATGTGACCAAAGAGGGCGCACTGGCCGGGCCACGGGTGTTGGAGCACATGGTGGACACCGTGCTGTATTTCGAA

GGCGAATCCGACGGACGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTCGGTGCGGTCAACGAATTGGGTGTGTTCGC

CATGACTGACCGGGGGCTTAAGGAAGTCTCCAACCCTTCGGCGATTTTTCTCACGCGGGCCCAGGAAGAAGTCCCCGGCA

GCGTGGTGATGGCAACGTGGGAGGGCACCCGCCCGATGCTGGTGGAAGTGCAGGCCCTGGTGGATGACAGTCATTTGGCC

AACCCGCGCCGCGTGACGTTGGGTCTGGATCAGAACCGCCTGGCGATGCTGCTTGCCGTATTGCATCGTCACGGCGGCAT

TCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTTGGCGGGGTAAAAGTGCTGGAAACGGCGTCCGACCTGGCGTTGA

TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCATTGCCCCATGATTTGCTGGTGTTCGGTGAGGTCGGTTTGTCGGGC

GAGGTGCGCCCGGTACCCAGCGGCCAGGAACGCTTGAAGGAAGCTGCCAAGCATGGCTTCAAGCGCGCGATCGTGCCGAA

GGGCAATGCGCCGAAGGAGTCGCCGCCGGGGTTGCAGATTATCGCGGTGACGCGTCTGGAACAGGCACTGGACGCGCTAT

TCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.453	100	0.497
radA	Streptococcus mitis SK321	46.711	100	0.468
radA	Streptococcus mitis NCTC 12261	46.491	100	0.466
radA	Streptococcus pneumoniae Rx1	46.491	100	0.466
radA	Streptococcus pneumoniae D39	46.491	100	0.466
radA	Streptococcus pneumoniae R6	46.491	100	0.466
radA	Streptococcus pneumoniae TIGR4	46.491	100	0.466

Detailed information NTG0639711