Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVD17_RS08660 Genome accession   NZ_CP089981
Coordinates   2100489..2101868 (+) Length   459 a.a.
NCBI ID   WP_233766143.1    Uniprot ID   -
Organism   Fulvivirga ulvae strain SS9-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2095489..2106868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD17_RS08650 (LVD17_08650) - 2096447..2098375 (-) 1929 WP_233766141.1 DUF3857 domain-containing transglutaminase family protein -
  LVD17_RS08655 (LVD17_08655) - 2098344..2100326 (-) 1983 WP_233766142.1 DUF3857 domain-containing protein -
  LVD17_RS08660 (LVD17_08660) radA 2100489..2101868 (+) 1380 WP_233766143.1 DNA repair protein RadA Machinery gene
  LVD17_RS08665 (LVD17_08665) - 2101898..2102503 (+) 606 WP_233766144.1 DUF2179 domain-containing protein -
  LVD17_RS08670 (LVD17_08670) - 2102517..2103425 (-) 909 WP_306415996.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  LVD17_RS08675 (LVD17_08675) - 2103422..2104726 (-) 1305 WP_233766145.1 amidohydrolase -
  LVD17_RS08680 (LVD17_08680) - 2104818..2105951 (-) 1134 WP_233766147.1 DUF4097 domain-containing protein -
  LVD17_RS08685 (LVD17_08685) - 2105935..2106462 (-) 528 WP_233766148.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50115.41 Da        Isoelectric Point: 6.5038

>NTDB_id=639670 LVD17_RS08660 WP_233766143.1 2100489..2101868(+) (radA) [Fulvivirga ulvae strain SS9-22]
MAKTKTVYFCQDCGYESAKWLGKCPACNTWNSFVEEVTKKGSAADKNDWRNSGTGKASSTPKKIEDITHEKEQRINTRSG
ELNRVLGGGLVPGSVILIAGEPGIGKSTLMLQIGLSVKHKVLYVSGEESEQQIKMRAERMTDIKNPGECYILAETSTQNI
FQQIEALKPDILVVDSVQTLHSDNIESAAGSVSQVKQCTAELIKYAKETATPVFLVGHITKEGAIAGPKVLEHMVDTVLQ
FEGDRHLTYRILRTTKNRFGSTSELGIYEMMGSGLREVSNPSEILISQKDSELSGVTIGATIEGNRPLLIEIQSLVSTAA
YGTPQRSSTGFDTRRLNMLLAVLEKRCGFRLGLQDVFLNMAGGIKVEDPAIDLAVCSAVISSLEEISISEKACFAAEVGL
GGELRAVNRLDNRIAEAQKLGFEEVYVSKFGMKGIEPKKYQITIKPFARITDVFSDLFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=639670 LVD17_RS08660 WP_233766143.1 2100489..2101868(+) (radA) [Fulvivirga ulvae strain SS9-22]
ATGGCTAAAACCAAAACTGTATATTTCTGTCAGGACTGTGGCTACGAATCTGCCAAATGGCTGGGCAAGTGCCCGGCCTG
TAATACATGGAACAGCTTCGTGGAAGAGGTTACCAAAAAAGGTTCGGCCGCGGATAAAAATGACTGGCGCAACAGTGGTA
CAGGAAAGGCTTCTTCAACACCAAAGAAGATTGAGGATATAACTCATGAGAAGGAGCAGCGCATCAATACCAGAAGTGGT
GAACTAAACCGCGTGTTGGGCGGTGGCCTGGTGCCGGGGTCGGTAATTCTTATCGCTGGTGAGCCTGGTATAGGTAAGTC
TACTTTAATGCTGCAAATAGGATTATCTGTAAAGCACAAAGTACTTTATGTCTCAGGCGAAGAAAGTGAGCAACAGATTA
AAATGCGTGCCGAGCGCATGACGGATATTAAAAATCCTGGAGAGTGTTACATCCTGGCCGAAACTTCTACTCAGAATATA
TTTCAGCAAATAGAGGCTTTAAAACCCGATATACTGGTGGTTGACTCCGTACAGACTTTGCACTCTGACAACATTGAATC
TGCGGCGGGCAGTGTTTCTCAGGTCAAGCAGTGTACCGCAGAACTTATCAAATATGCCAAGGAAACGGCAACTCCGGTTT
TTCTGGTAGGCCATATTACAAAGGAGGGTGCTATTGCAGGGCCAAAGGTACTCGAGCATATGGTAGATACGGTGCTCCAG
TTTGAGGGTGACAGACACCTGACCTACCGCATTTTACGCACTACAAAAAACAGGTTTGGCTCTACTTCAGAGCTAGGTAT
TTATGAAATGATGGGCTCCGGACTCCGGGAAGTCAGCAACCCTTCGGAAATCCTGATATCACAAAAAGACAGTGAGCTAA
GTGGCGTGACCATCGGAGCTACGATAGAAGGCAACAGGCCTTTACTTATAGAAATACAGTCGCTGGTAAGTACCGCAGCT
TACGGCACTCCGCAAAGAAGCTCTACAGGGTTTGATACTCGACGACTGAATATGCTGCTTGCTGTATTGGAAAAAAGATG
TGGATTCCGGCTTGGTTTGCAAGATGTATTTCTTAATATGGCTGGTGGCATCAAGGTGGAAGATCCGGCTATTGACCTGG
CCGTTTGCAGCGCAGTAATTTCTTCGCTTGAAGAAATTTCAATTTCTGAAAAAGCCTGTTTTGCTGCAGAAGTCGGCCTC
GGGGGAGAGCTAAGGGCGGTAAACCGCCTGGATAATCGAATTGCGGAAGCGCAAAAGCTTGGGTTTGAAGAGGTTTATGT
TTCAAAATTTGGAATGAAGGGCATAGAACCTAAAAAATATCAGATCACCATTAAACCTTTTGCAAGGATCACTGATGTTT
TTAGTGACTTGTTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

48.913

100

0.49
  radA Streptococcus mitis SK321

48.696

100

0.488
  radA Streptococcus pneumoniae Rx1

49.888

96.95

0.484
  radA Streptococcus pneumoniae TIGR4

49.888

96.95

0.484
  radA Streptococcus pneumoniae D39

49.888

96.95

0.484
  radA Streptococcus pneumoniae R6

49.888

96.95

0.484
  radA Bacillus subtilis subsp. subtilis str. 168

49.776

97.168

0.484