Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVD15_RS06180 Genome accession   NZ_CP089980
Coordinates   1478297..1479676 (+) Length   459 a.a.
NCBI ID   WP_233779433.1    Uniprot ID   -
Organism   Fulvivirga maritima strain SW1-E11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1473297..1484676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD15_RS06155 (LVD15_06155) - 1473418..1473831 (-) 414 WP_233779428.1 hypothetical protein -
  LVD15_RS06160 (LVD15_06160) - 1473965..1474303 (+) 339 WP_233779429.1 tRNA-binding protein -
  LVD15_RS06165 (LVD15_06165) - 1474418..1476853 (+) 2436 WP_233779430.1 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase -
  LVD15_RS06170 (LVD15_06170) - 1476857..1477396 (+) 540 WP_233779431.1 hypothetical protein -
  LVD15_RS06175 (LVD15_06175) - 1477403..1478149 (-) 747 WP_233779432.1 DUF3857 domain-containing protein -
  LVD15_RS06180 (LVD15_06180) radA 1478297..1479676 (+) 1380 WP_233779433.1 DNA repair protein RadA Machinery gene
  LVD15_RS06185 (LVD15_06185) - 1479685..1480290 (+) 606 WP_233779434.1 DUF2179 domain-containing protein -
  LVD15_RS06190 (LVD15_06190) - 1480303..1481646 (-) 1344 WP_233779435.1 T9SS type A sorting domain-containing protein -
  LVD15_RS06195 (LVD15_06195) - 1481685..1482572 (-) 888 WP_233779436.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  LVD15_RS06200 (LVD15_06200) - 1482572..1483873 (-) 1302 WP_233779437.1 amidohydrolase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50113.33 Da        Isoelectric Point: 5.7968

>NTDB_id=639656 LVD15_RS06180 WP_233779433.1 1478297..1479676(+) (radA) [Fulvivirga maritima strain SW1-E11]
MAKTKTLFFCQNCGYESAKWLGKCPSCGSWNSFVEEVTKSSSSTDKNEWRTKSKQQKSAPKKVGEITHEKDQRINSKNSE
LNRVLGGGIVAGSVVLIAGEPGIGKSTLMLQIALSVNCKVLYVSGEESEQQIKMRADRITNIESSANECFILAETDTQDI
FSQAEELKPDVLILDSIQTLHSSHVESAAGSVSQVKQCTAELIKFAKETNTPLFLVGHITKDGTIAGPKVLEHMVDTVLQ
FEGDRHLSYRILRTTKNRFGSTSELGIYEMLGSGLREVSNPSEILISQKDGELSGVTIGATIEGNRPLMIEIQSLVSTAA
YGTPQRSSTGFEPRRLNMLLAVLEKRCGFRLGLQDVFLNMAGGIKVEDPAMDLAVCCAVVSSLEEISIPEKVCFAAEVGL
GGELRAVNRIESRIAEAEKLGFDEIYISKFGMKGAEQSKFNIAIKPFSKINDIFSELFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=639656 LVD15_RS06180 WP_233779433.1 1478297..1479676(+) (radA) [Fulvivirga maritima strain SW1-E11]
ATGGCCAAAACTAAAACCTTATTCTTTTGTCAGAATTGCGGGTATGAATCAGCTAAGTGGCTGGGCAAGTGCCCTTCATG
CGGTAGCTGGAACAGCTTTGTAGAAGAAGTAACTAAAAGCAGCTCATCTACTGATAAAAATGAATGGAGAACCAAAAGCA
AACAGCAAAAATCTGCTCCTAAAAAAGTAGGGGAGATAACTCATGAAAAAGACCAGCGGATTAACTCTAAAAACAGTGAG
CTTAATCGTGTACTTGGTGGAGGTATAGTGGCAGGGTCTGTGGTGCTCATTGCGGGCGAACCTGGTATTGGCAAGTCTAC
ACTGATGCTGCAAATAGCGCTTTCTGTTAACTGCAAAGTGCTGTATGTATCTGGTGAAGAAAGTGAACAGCAAATAAAAA
TGCGTGCCGACAGGATCACTAATATCGAATCTAGCGCCAACGAATGTTTTATTTTAGCAGAAACAGATACTCAGGACATT
TTTTCGCAAGCTGAAGAATTGAAGCCTGATGTACTGATTCTAGACTCTATCCAAACACTGCACTCTTCTCATGTAGAATC
TGCCGCTGGTAGTGTTTCTCAGGTAAAACAATGTACAGCGGAGCTGATAAAATTTGCCAAGGAAACCAATACACCACTAT
TTTTGGTAGGCCATATTACAAAAGATGGCACCATAGCCGGCCCCAAGGTATTAGAACACATGGTGGATACCGTACTTCAA
TTTGAAGGCGACCGTCACCTCTCGTACCGCATATTAAGAACTACCAAAAACAGGTTCGGTTCTACTTCAGAGCTAGGCAT
TTATGAAATGTTGGGCTCTGGCTTAAGAGAAGTGAGCAACCCATCAGAAATACTTATATCACAAAAAGACGGAGAGCTGA
GTGGTGTAACTATTGGGGCTACAATAGAAGGCAACCGACCTTTAATGATAGAAATACAATCATTAGTAAGCACGGCGGCC
TATGGCACCCCACAAAGGAGCTCAACAGGTTTTGAGCCTCGCCGGTTAAATATGCTACTGGCAGTATTAGAAAAACGATG
TGGTTTCAGATTAGGCCTGCAAGATGTATTTTTAAATATGGCCGGAGGCATAAAAGTAGAAGATCCTGCCATGGACTTGG
CAGTGTGCTGTGCGGTAGTATCATCATTAGAAGAAATATCTATACCCGAAAAAGTATGCTTTGCTGCGGAAGTAGGGCTT
GGTGGTGAGCTAAGAGCCGTAAACAGAATTGAAAGTAGAATAGCAGAAGCGGAAAAGCTTGGCTTTGATGAAATTTATAT
ATCGAAATTCGGAATGAAAGGGGCAGAACAATCAAAATTTAACATTGCCATTAAACCTTTCAGTAAGATAAACGATATTT
TTAGTGAACTCTTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(65-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.696

100

0.488
  radA Streptococcus mitis NCTC 12261

48.696

100

0.488
  radA Streptococcus pneumoniae Rx1

48.696

100

0.488
  radA Streptococcus pneumoniae R6

48.696

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.696

100

0.488
  radA Streptococcus mitis SK321

48.478

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

49.095

96.296

0.473