Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LU301_RS11785 Genome accession   NZ_CP089978
Coordinates   2352961..2354541 (-) Length   526 a.a.
NCBI ID   WP_305271106.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2347961..2359541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS11775 (LU301_11765) coaBC 2350217..2351446 (-) 1230 WP_305271105.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LU301_RS11780 (LU301_11770) pilR 2351448..2352893 (-) 1446 WP_305274091.1 sigma-54 dependent transcriptional regulator Regulator
  LU301_RS11785 (LU301_11775) pilS 2352961..2354541 (-) 1581 WP_305271106.1 PAS domain-containing sensor histidine kinase Regulator
  LU301_RS11790 (LU301_11780) - 2354554..2355189 (-) 636 WP_305271108.1 response regulator -
  LU301_RS11795 (LU301_11785) - 2355475..2356530 (+) 1056 WP_305271110.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LU301_RS11800 (LU301_11790) - 2356639..2357811 (-) 1173 WP_305271111.1 hypothetical protein -
  LU301_RS11805 (LU301_11795) - 2357869..2358228 (-) 360 WP_305271113.1 hypothetical protein -
  LU301_RS11810 (LU301_11800) - 2358298..2358804 (-) 507 WP_305271116.1 hypothetical protein -
  LU301_RS11815 (LU301_11805) - 2358831..2359319 (-) 489 WP_305271119.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 60373.47 Da        Isoelectric Point: 6.2222

>NTDB_id=639643 LU301_RS11785 WP_305271106.1 2352961..2354541(-) (pilS) [Moraxella sp. ZY210820]
MSIETTYIIHRLGLLYSLYRLVLACSLMLTFVMTFNNLKAYYGYPDLYLYTSIIYIIFALVQMTLMRFVKIGSPVHLIAM
FVVDVVLLGLLTFALVHGVNLQIGLIYMIAVFLSSILLDKKFSLIIMLSAIISVTYQNFIGGIFSLSLLRDFTNNILLAF
LFIVMHQVGRIALERFKILENMTIHQSEELSQLQGINQSIMQQIDVGYLLINKQAQIVLSNPRACQLLGLPQLVSYEKYP
LEVWQDEFYQYIQEHSLICPDEQLHHHAFHFHSHQSGYKMSVKWHILHTANEPMTLFILKDTQEINQQVQQLKLAALGQL
SASIAHEIRNPLAAIVQANELLKDELSEDAKMLSNMISKQTERINKIIQSTLSMAKNDGVRTVMIYLQDFVQGMLDEDLN
DVKEQIQVEIEPDSCIYFDQNQLRQVMINLIRNALRHNQSEQAIIIRTQMFEHLIWIDVIDFGQGVEKSQQANLFKPFFS
TEINGTGLGLYLSSSFCEANHATLRYIDEYQGACFRIEGLACKMSN

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=639643 LU301_RS11785 WP_305271106.1 2352961..2354541(-) (pilS) [Moraxella sp. ZY210820]
ATGTCTATTGAAACTACATATATTATTCATCGCTTAGGATTATTATATTCTCTGTATCGTTTGGTGTTGGCATGCTCGTT
AATGCTCACCTTTGTGATGACGTTTAATAATTTAAAAGCCTATTATGGCTATCCTGATTTATATCTTTATACATCAATAA
TATATATTATATTTGCTTTAGTGCAAATGACACTAATGCGTTTTGTTAAAATTGGTTCACCTGTACATTTAATTGCCATG
TTTGTAGTTGATGTGGTGCTTTTAGGTCTTTTAACTTTTGCGTTGGTGCATGGTGTTAATTTACAAATTGGCTTGATTTA
TATGATTGCAGTGTTTTTGTCGAGTATTTTGCTCGATAAAAAATTCTCATTAATCATTATGTTATCAGCCATTATTAGTG
TAACTTATCAAAATTTTATTGGTGGGATTTTTAGTTTAAGTTTATTGCGAGATTTTACCAATAATATTTTATTGGCATTT
TTATTTATTGTTATGCATCAGGTGGGGCGTATTGCTTTAGAACGCTTTAAAATTTTAGAAAATATGACCATTCATCAATC
GGAAGAGTTAAGCCAATTACAAGGTATTAACCAGTCGATTATGCAACAGATTGATGTAGGATATTTGCTGATAAATAAGC
AAGCACAGATAGTATTATCTAATCCACGAGCGTGTCAGTTATTAGGATTACCACAATTAGTATCATATGAAAAATATCCG
TTAGAAGTTTGGCAAGATGAGTTTTATCAATATATTCAAGAGCATAGTTTAATTTGTCCAGATGAGCAATTACATCATCA
TGCGTTTCATTTTCATAGTCATCAATCAGGGTATAAAATGAGCGTTAAATGGCATATTTTACATACTGCTAATGAGCCGA
TGACGTTATTTATTCTAAAAGATACGCAAGAAATTAATCAGCAAGTTCAACAGTTAAAATTAGCAGCTTTGGGACAACTC
TCTGCCAGTATTGCCCATGAAATTCGTAATCCACTTGCGGCAATTGTGCAAGCGAATGAATTGTTAAAAGATGAATTATC
AGAAGATGCCAAAATGCTATCAAATATGATTAGTAAACAAACCGAGCGTATTAATAAAATTATTCAAAGTACGCTAAGCA
TGGCAAAAAATGATGGTGTACGTACGGTGATGATTTATTTACAAGATTTTGTACAAGGAATGCTTGATGAAGATTTAAAT
GATGTTAAAGAACAAATTCAAGTAGAAATTGAGCCTGATTCTTGTATTTATTTTGACCAAAATCAATTGCGTCAAGTGAT
GATTAATTTGATACGTAATGCTTTACGCCATAATCAAAGTGAGCAAGCAATTATTATTCGTACGCAAATGTTTGAACACC
TGATTTGGATTGATGTGATCGATTTTGGGCAAGGTGTGGAAAAATCACAACAAGCTAATTTATTTAAACCTTTTTTTAGT
ACCGAAATTAATGGTACAGGCTTGGGTTTATATTTATCGAGCAGTTTTTGTGAAGCTAATCATGCAACTTTACGTTATAT
TGATGAATATCAAGGGGCGTGTTTTAGAATCGAAGGTTTAGCTTGTAAGATGAGTAATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(419-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(316-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

50.485

97.909

0.494