Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LU301_RS11390 Genome accession   NZ_CP089978
Coordinates   2258794..2259711 (-) Length   305 a.a.
NCBI ID   WP_305270931.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2253794..2264711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS11370 (LU301_11360) - 2253981..2254598 (-) 618 WP_305270921.1 DUF6304 family protein -
  LU301_RS11375 (LU301_11365) - 2254595..2255566 (-) 972 WP_305270924.1 NYN domain-containing protein -
  LU301_RS11380 (LU301_11370) topA 2255570..2258206 (-) 2637 WP_305270926.1 type I DNA topoisomerase -
  LU301_RS11385 (LU301_11375) - 2258338..2258784 (-) 447 WP_305270929.1 ammonium transporter -
  LU301_RS11390 (LU301_11380) tonB2 2258794..2259711 (-) 918 WP_305270931.1 energy transducer TonB Machinery gene
  LU301_RS11395 (LU301_11385) - 2259866..2260558 (+) 693 WP_305270934.1 hypothetical protein -
  LU301_RS11400 (LU301_11390) - 2260672..2261367 (+) 696 WP_305270937.1 DUF3108 domain-containing protein -
  LU301_RS11405 (LU301_11395) - 2261823..2263124 (-) 1302 WP_305270940.1 homoserine dehydrogenase -
  LU301_RS11410 (LU301_11400) - 2263219..2264019 (-) 801 WP_305270942.1 DsbC family protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 34510.75 Da        Isoelectric Point: 5.0471

>NTDB_id=639641 LU301_RS11390 WP_305270931.1 2258794..2259711(-) (tonB2) [Moraxella sp. ZY210820]
MNPKLTRILNQQALWWRDPLFLGAIFIALLVHGAILSVHFAMPTATNASNKDTAIAINIHSEEVEESDFLAQANQVGSGD
SEEQKRTEKLFDAQDKEMSDGNQLEQNLERLKQQQEFKFEDKVLMTVLSWQKQAEEKQRKKAEEAFESEYQTRAAMIASL
EAQYANRQQDLAKMQNIETVSSNITAKQNASAAYLEKFRQKVETFGNRDYPEQARLQNLAGEVRLMVSLNQRGGIRDIQL
IKSSGHDVLDKAAIASVRKAAPFGEFDPAMKKDISELRIIRTWRFDPASSEIGVQASTDKSQDDE

Nucleotide


Download         Length: 918 bp        

>NTDB_id=639641 LU301_RS11390 WP_305270931.1 2258794..2259711(-) (tonB2) [Moraxella sp. ZY210820]
GTGAATCCAAAATTAACTCGTATTTTAAATCAGCAGGCTTTGTGGTGGAGAGATCCATTATTTTTAGGTGCAATCTTTAT
TGCACTATTGGTGCATGGTGCAATTTTGAGTGTACATTTTGCTATGCCTACTGCGACTAATGCTAGTAATAAAGATACAG
CTATTGCTATTAATATTCACTCTGAAGAAGTAGAAGAATCGGACTTTTTAGCTCAAGCCAATCAAGTTGGTAGTGGAGAT
TCGGAAGAACAAAAACGTACAGAAAAATTGTTTGATGCCCAAGACAAAGAAATGAGTGATGGTAATCAACTTGAGCAAAA
TTTAGAGCGATTGAAACAGCAACAAGAATTTAAATTTGAAGATAAAGTGTTGATGACCGTATTAAGCTGGCAAAAACAAG
CAGAAGAAAAACAGCGTAAAAAAGCAGAAGAAGCATTTGAGAGTGAATATCAAACCCGAGCTGCGATGATTGCTAGCTTA
GAAGCTCAGTATGCCAATCGTCAGCAAGATTTAGCTAAAATGCAAAATATCGAAACAGTCTCATCAAATATTACCGCAAA
ACAAAATGCATCGGCGGCTTATTTAGAAAAGTTCCGTCAAAAAGTGGAAACTTTTGGTAACCGTGATTATCCTGAACAAG
CTCGTTTACAAAATTTAGCGGGTGAGGTACGTTTGATGGTCAGTTTAAATCAGCGTGGTGGTATTCGTGATATTCAGTTG
ATTAAAAGCTCTGGGCATGATGTGTTAGATAAAGCAGCAATTGCGTCTGTGCGTAAAGCAGCACCGTTTGGCGAGTTTGA
CCCTGCCATGAAGAAAGATATTTCTGAATTGCGTATTATTCGTACATGGCGATTTGACCCCGCTTCATCAGAAATTGGTG
TTCAGGCTTCAACTGATAAATCTCAAGATGATGAATAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(208-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

57.447

92.459

0.531