Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LU301_RS08630 Genome accession   NZ_CP089978
Coordinates   1742265..1744478 (+) Length   737 a.a.
NCBI ID   WP_305269825.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1737265..1749478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS08610 (LU301_08595) - 1738182..1738946 (+) 765 WP_305269818.1 DUF481 domain-containing protein -
  LU301_RS08615 (LU301_08600) - 1739049..1739888 (+) 840 WP_305269820.1 glycosyltransferase family A protein -
  LU301_RS08620 (LU301_08605) rodA 1740036..1741181 (+) 1146 WP_305269822.1 rod shape-determining protein RodA -
  LU301_RS12085 - 1741700..1742080 (+) 381 Protein_1673 septal ring lytic transglycosylase RlpA family protein -
  LU301_RS08630 (LU301_08615) priA 1742265..1744478 (+) 2214 WP_305269825.1 primosomal protein N' Machinery gene
  LU301_RS08635 (LU301_08620) dut 1744550..1745005 (+) 456 WP_305274040.1 dUTP diphosphatase -
  LU301_RS08640 (LU301_08625) - 1745034..1746512 (+) 1479 WP_305269827.1 phosphomannomutase/phosphoglucomutase -
  LU301_RS08645 (LU301_08630) argB 1746551..1747456 (+) 906 WP_305269829.1 acetylglutamate kinase -
  LU301_RS08650 (LU301_08635) - 1747594..1748367 (+) 774 WP_305269831.1 Nif3-like dinuclear metal center hexameric protein -
  LU301_RS08655 (LU301_08640) - 1748423..1748644 (-) 222 WP_305269833.1 hypothetical protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 83919.36 Da        Isoelectric Point: 9.2245

>NTDB_id=639634 LU301_RS08630 WP_305269825.1 1742265..1744478(+) (priA) [Moraxella sp. ZY210820]
MTTQTIHRVRVAVPSPLYQSFDYQIKADDFTRAQIGARVIVPFGSQQLIAIITDKFSPNDVIETTFKLKPIIQLLDEHNI
FGHEVFNLLQWVAQYYQYPLGETFHIGLPALLRQGKPADIIWHHWRALAPEQFTAKLTDKQQQAYQIVNLHQHGSSEDIL
NASGVSTATLNQLLNKNAVVCSVEQPTTSSPSVQLAQLPLTPNVEQRHAIEQILAHQHHYHGFLLDGLTGSGKTEVYLQV
IYEVLKQERQVLVLVPEIGLTPQTIARFQSRFNTPMAVLHSGLNDSKRLQAWQQAKSGRVSIVLGTRSAIFTPFKNLGLI
ILDEEHDLSYKQQDSLRYHARDVALYRAYQQNCPIILGSATPSIESYYLVEQQKLSVLQLNQRAGVASLPQLHTIDLTTQ
KKKYGLSELLIGKIKHTLKQGEQVLLFLNRRGYAPVLFCENCAWQADCPRCDAHFTVHNQPYQHLRCHHCSLVYTLPQQC
PKCQSHSLKPLGMGTSQMEQHLQVLFKDYPIVRIDRDSTHKADSWDKFYQQIQENKPLILIGTQMLSKGHHFPYVTLVGI
LDVDAGFFSVDFRASERTAQQIIQVAGRAGRIHKKGEVYLQTYRPQHPMLDILLKENYRSFALHSLAERKSAHYPPYSYA
GLVRASSKNEQYNLAFLQQAITLLPQNSGLTINILGPTPAPMSKKAGYYQAHILLMSLHRREFHQQLKTWWLDVVKLNAK
KQFSLRLSLDIDPQELG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=639634 LU301_RS08630 WP_305269825.1 1742265..1744478(+) (priA) [Moraxella sp. ZY210820]
ATGACCACTCAAACAATCCACCGTGTACGTGTTGCAGTACCTTCACCATTATATCAAAGTTTTGATTATCAAATTAAAGC
TGATGATTTTACTCGTGCTCAAATTGGTGCAAGAGTAATAGTTCCATTTGGCTCACAACAATTAATTGCTATTATCACAG
ATAAATTTAGCCCTAATGATGTTATAGAAACCACATTTAAACTTAAACCTATTATTCAACTATTAGATGAACATAATATT
TTTGGTCATGAGGTTTTTAATCTATTACAATGGGTTGCTCAATATTATCAATATCCTTTAGGGGAAACTTTTCACATCGG
TTTACCTGCCCTACTGCGACAAGGTAAACCTGCTGATATTATTTGGCATCATTGGCGAGCATTAGCACCAGAACAATTTA
CCGCAAAATTAACAGATAAACAGCAACAAGCCTATCAGATTGTCAATTTACATCAACATGGCAGTAGCGAAGATATTTTA
AATGCAAGTGGCGTTAGCACAGCAACTTTAAATCAATTATTAAATAAAAATGCAGTTGTTTGTAGTGTAGAACAACCAAC
AACATCTTCGCCATCGGTACAACTAGCTCAATTACCTTTAACACCCAATGTTGAACAACGTCATGCGATTGAACAAATTC
TAGCACATCAACATCATTATCATGGTTTTTTGTTAGATGGTTTGACAGGCAGTGGTAAAACCGAAGTTTATCTACAGGTC
ATATATGAAGTACTTAAACAAGAGAGACAAGTTTTAGTACTCGTACCCGAAATCGGTTTAACACCACAAACTATTGCTCG
TTTTCAATCACGTTTTAATACACCTATGGCGGTTTTACATTCAGGATTAAATGACTCAAAACGCCTACAAGCCTGGCAAC
AAGCAAAATCAGGACGTGTCTCAATTGTATTAGGTACTCGATCTGCTATTTTTACACCTTTTAAAAATTTAGGTTTAATT
ATTCTTGATGAAGAGCATGATTTATCTTATAAACAACAAGATAGCTTACGTTATCACGCCCGAGATGTTGCCTTATATCG
TGCCTATCAACAAAATTGTCCGATTATTTTAGGGTCAGCCACACCCAGTATCGAAAGTTATTATTTAGTAGAACAACAAA
AATTAAGTGTTTTACAACTCAACCAACGAGCAGGTGTGGCAAGTTTACCTCAATTGCATACCATTGATTTAACCACTCAA
AAGAAAAAATATGGTCTAAGTGAGTTACTCATTGGTAAAATTAAACACACCTTAAAACAGGGTGAACAAGTATTATTATT
TTTAAATCGACGTGGTTATGCACCTGTATTATTTTGTGAAAATTGTGCATGGCAAGCGGATTGCCCTCGTTGTGATGCCC
ATTTTACCGTGCATAATCAACCTTATCAGCATTTACGTTGCCATCATTGTAGTTTAGTTTATACCCTACCCCAACAATGC
CCAAAATGTCAGTCCCATAGCTTAAAACCCTTAGGCATGGGAACGAGTCAAATGGAGCAACATTTACAAGTTTTGTTTAA
AGATTATCCTATTGTACGTATAGACCGAGATAGCACACATAAGGCAGATAGTTGGGATAAATTTTATCAACAAATTCAAG
AAAATAAGCCTTTGATTTTAATTGGGACACAAATGCTCTCTAAAGGTCATCATTTTCCCTATGTCACTTTGGTAGGGATT
TTAGATGTTGATGCAGGCTTTTTTAGTGTTGATTTTCGTGCGTCAGAACGTACGGCACAGCAAATTATTCAAGTAGCTGG
ACGTGCTGGACGTATTCATAAAAAAGGTGAAGTGTATTTACAGACTTATCGTCCACAGCACCCTATGTTAGACATTTTAT
TAAAAGAAAATTATCGTAGTTTTGCTTTACACAGTTTGGCTGAACGCAAATCGGCACATTATCCCCCTTATAGCTATGCT
GGTTTGGTACGAGCATCATCAAAAAATGAACAATATAATTTAGCGTTTTTACAACAAGCCATTACATTGTTACCTCAAAA
TAGTGGTTTAACCATCAATATTTTAGGTCCTACCCCTGCCCCTATGTCTAAAAAAGCAGGTTATTATCAAGCTCATATTC
TATTGATGTCACTTCATCGCCGTGAGTTTCACCAACAATTAAAAACTTGGTGGCTAGATGTTGTTAAATTAAATGCAAAA
AAACAATTTAGTTTAAGATTAAGTTTAGATATTGACCCGCAAGAGTTGGGGTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(10-109)

Primosomal protein N C-terminal domain (PriA_C)

(636-733)

DEAD/DEAH box helicase (DEAD)

(206-363)

Helicase conserved C-terminal domain (Helicase_C)

(520-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

59.728

99.729

0.596