Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LU297_RS00880 Genome accession   NZ_CP089977
Coordinates   207513..208922 (-) Length   469 a.a.
NCBI ID   WP_263076543.1    Uniprot ID   -
Organism   Moraxella nasicaprae strain ZY201224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202513..213922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU297_RS00855 (LU297_00855) tsaE 203038..203457 (-) 420 WP_263076538.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LU297_RS00860 (LU297_00860) - 203454..204047 (-) 594 WP_263076539.1 6-carboxytetrahydropterin synthase -
  LU297_RS00865 (LU297_00865) - 204140..204535 (-) 396 WP_263076540.1 hypothetical protein -
  LU297_RS00870 (LU297_00870) - 204748..206004 (-) 1257 WP_263076541.1 saccharopine dehydrogenase family protein -
  LU297_RS00875 (LU297_00875) - 206228..207439 (-) 1212 WP_263076542.1 carboxynorspermidine decarboxylase -
  LU297_RS00880 (LU297_00880) radA 207513..208922 (-) 1410 WP_263076543.1 DNA repair protein RadA Machinery gene
  LU297_RS00885 (LU297_00885) glnA 209111..210520 (-) 1410 WP_263076544.1 type I glutamate--ammonia ligase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50136.64 Da        Isoelectric Point: 7.4105

>NTDB_id=639599 LU297_RS00880 WP_263076543.1 207513..208922(-) (radA) [Moraxella nasicaprae strain ZY201224]
MSKKSSYVCQSCGANYGKWAGQCADCGEWNTLVESVNVALPHHSKVKSTKPTPRTGNYAGATSGVMTLNNVGFSLETRMP
TGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAIFMAGRQSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVL
AETNVETICQALTAEQPAVAVIDSIQTLFTEMIQSAPGGVAQIRETAAILTRYAKQTGTALFLVGHVTKEGALAGPRVLE
HMVDTVLYFEGESDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEV
QALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGQDVYVNVVGGVKVMETGSDLAVLLACASSIKEKPLPSRLC
VFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIIPVANAPKDDNEQFKGIQIYAVERLDNAISKAFEIE

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=639599 LU297_RS00880 WP_263076543.1 207513..208922(-) (radA) [Moraxella nasicaprae strain ZY201224]
ATGTCCAAGAAATCCTCCTATGTCTGCCAATCTTGCGGTGCCAATTATGGCAAATGGGCAGGGCAATGTGCCGATTGTGG
CGAGTGGAACACTTTGGTAGAAAGTGTCAATGTCGCCTTGCCCCACCACAGCAAAGTCAAAAGCACTAAGCCCACCCCCC
GTACAGGTAACTATGCAGGGGCGACCAGTGGCGTAATGACCCTAAACAATGTCGGTTTTTCGCTAGAAACCCGTATGCCC
ACAGGCATTGGCGAGTTTGACCGTGTGCTTGGCGGGGGGCTTGTGGCAGGTTCGGTGGTCTTGATTGGTGGCGACCCTGG
CATTGGCAAATCCACCATTTTGCTCCAAACCGCTATTTTTATGGCAGGCAGGCAGTCACTCTCAGGTTCTGCCCTTTATA
TCACAGGCGAAGAGAGCTTGTCGCAAGTGGCAATGCGTGCGGTGCGTTTGGGACTGCCGACCGACCGTTTGCGTGTTTTG
GCGGAAACCAATGTAGAAACCATCTGTCAGGCACTCACCGCTGAACAACCTGCGGTGGCGGTTATTGACTCTATTCAAAC
TTTGTTTACCGAAATGATACAATCCGCTCCTGGGGGCGTGGCTCAAATTCGTGAAACGGCGGCGATTTTGACCCGTTATG
CCAAACAAACAGGCACGGCTCTATTTTTGGTCGGACATGTAACCAAAGAAGGGGCTTTGGCAGGTCCTAGGGTGCTTGAA
CATATGGTGGATACGGTGCTGTATTTTGAGGGCGAGTCAGATAGCCGTTTTAGAATGATTCGGGCGGTCAAAAACCGTTT
TGGGGCGGTCAATGAGCTTGGGATTTTTGGAATGACTGATACAGGCTTAAAGGAAGTTGCCAATCCGTCCGCCATTTTTT
TAAGCCGTTATGATAAGCCGATTGCAGGCTCGGTGGTGATGGTTAGCCGTGAGGGGACTCGTCCGCTTTTGGTGGAGGTG
CAAGCCCTTGTGGACGACTCGCAAGGTCAGCCAAGGCGAATGGCTTTGGGGCTTGATTATCAACGCCTATCAATGCTCCT
TGCGGTAATGCACCGCCACGGGGGTATTCACACTAGCGGACAAGATGTCTATGTCAATGTCGTGGGCGGGGTCAAGGTGA
TGGAGACAGGCTCTGATTTAGCGGTGCTTTTGGCGTGTGCGTCTAGTATCAAAGAAAAACCGCTCCCATCAAGGCTTTGT
GTGTTTGGCGAAGTGGGTTTGTCTGGCGAAATACGCCCTGTACCAAACGGTCAAGAACGCCTAAAAGAGGCGATGAAACA
TGGCTTTACCCACGCCATCATTCCTGTTGCCAATGCTCCAAAGGACGATAACGAACAATTTAAAGGCATACAGATTTATG
CCGTAGAGCGATTGGACAATGCCATTAGTAAGGCTTTTGAGATTGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-438)

AAA domain (AAA_25)

(90-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.822

99.574

0.486
  radA Streptococcus mitis NCTC 12261

45.319

100

0.454
  radA Streptococcus pneumoniae Rx1

45.319

100

0.454
  radA Streptococcus pneumoniae D39

45.319

100

0.454
  radA Streptococcus pneumoniae R6

45.319

100

0.454
  radA Streptococcus pneumoniae TIGR4

45.319

100

0.454
  radA Streptococcus mitis SK321

47.465

92.537

0.439