Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LU293_RS01450 Genome accession   NZ_CP089976
Coordinates   295244..296656 (-) Length   470 a.a.
NCBI ID   WP_242748158.1    Uniprot ID   -
Organism   Moraxella nasovis strain ZY201115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 290244..301656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU293_RS01425 (LU293_01425) - 290518..291288 (-) 771 WP_242748153.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  LU293_RS09890 - 291939..292286 (+) 348 Protein_285 septal ring lytic transglycosylase RlpA family protein -
  LU293_RS01435 (LU293_01435) - 292392..293138 (-) 747 WP_242748155.1 ABC transporter ATP-binding protein -
  LU293_RS01440 (LU293_01440) - 293177..294169 (-) 993 WP_242748156.1 ABC transporter substrate-binding protein -
  LU293_RS01445 (LU293_01445) - 294490..295233 (-) 744 WP_242748157.1 ABC transporter permease -
  LU293_RS01450 (LU293_01450) radA 295244..296656 (-) 1413 WP_242748158.1 DNA repair protein RadA Machinery gene
  LU293_RS01455 (LU293_01455) prmB 296724..297839 (-) 1116 WP_242748159.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  LU293_RS01460 (LU293_01460) - 298297..299469 (+) 1173 WP_242748160.1 cupin domain-containing protein -
  LU293_RS01465 (LU293_01465) - 299560..300294 (-) 735 WP_242748161.1 DDE-type integrase/transposase/recombinase -
  LU293_RS01470 (LU293_01470) - 300444..301421 (+) 978 WP_242748162.1 NAD(+) kinase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49829.31 Da        Isoelectric Point: 7.2368

>NTDB_id=639586 LU293_RS01450 WP_242748158.1 295244..296656(-) (radA) [Moraxella nasovis strain ZY201115]
MAKKSSYVCQSCGANYGKWSGQCTDCGEWNTLIEAPNIAMPHHRTAKSTSGSASTKVTNYAGAVSGVMSLDEVGVTLETR
MPTGISEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAIDSLAGSALYITGEESLSQVAMRAKRLCLPTDRLR
VLAETNVETICAALTSEQPAVAVIDSIQTLYTEAIQSAPGGVAQIRESAAMLTRFAKQTGTALFLVGHVTKEGSLAGPRV
LEHMVDTVLYFEGESDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYEKPIAGSVVMVSREGTRPLLV
EVQALVDDSHGQSRRMALGLDYQRLAMLLAVMHRHGGIHTSGQDVYVNVVGGVKVMETGSDLAVLLACASSLRAKALPPR
LAVFGEVGLSGEIRPVPNGQERLKEASKHGFTHAIIPKANAPKDQTMFGGIHVIAVDRLDDALAKAFELF

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=639586 LU293_RS01450 WP_242748158.1 295244..296656(-) (radA) [Moraxella nasovis strain ZY201115]
ATGGCAAAAAAATCAAGCTATGTCTGCCAGTCATGCGGTGCAAATTATGGCAAATGGTCAGGGCAATGCACCGACTGTGG
CGAGTGGAACACGCTGATAGAAGCACCGAACATCGCCATGCCACACCATCGCACCGCTAAATCAACTTCTGGTAGTGCCA
GCACCAAGGTGACAAACTATGCTGGTGCAGTCAGTGGGGTGATGAGCCTTGATGAAGTGGGTGTTACACTTGAGACTCGT
ATGCCGACAGGGATTAGTGAGTTTGATCGTGTGCTTGGTGGCGGGCTTGTAGCAGGTTCTGTGGTGCTAATTGGTGGAGA
CCCAGGTATTGGTAAATCTACGATACTATTACAAACCGCCATTAACATGGCAGCGATTGATAGCTTAGCAGGTTCAGCGT
TATACATCACAGGTGAAGAAAGCTTATCTCAGGTCGCTATGCGTGCCAAGCGTCTGTGCCTACCGACCGATCGCTTGCGT
GTGCTTGCTGAGACGAATGTTGAGACCATTTGTGCAGCCTTAACCAGCGAACAGCCAGCTGTTGCGGTGATAGATTCTAT
TCAGACGTTATACACAGAGGCGATACAGTCTGCTCCCGGTGGCGTGGCACAGATTAGAGAGTCTGCTGCCATGCTGACTC
GTTTTGCCAAGCAGACGGGAACCGCCTTATTTCTTGTTGGTCATGTTACCAAAGAAGGCTCGCTTGCTGGCCCTAGAGTA
CTAGAGCACATGGTAGATACGGTGTTGTATTTTGAGGGTGAGAGTGACAGTCGCTTTCGTATGATTCGTGCAGTCAAGAA
CCGCTTTGGTGCAGTCAATGAGCTTGGTATTTTTGGCATGACTGATACAGGGCTTAAGGAAGTGGCTAATCCATCTGCGA
TTTTTTTAAGTCGTTATGAAAAACCCATCGCAGGCTCGGTGGTGATGGTGAGCCGTGAAGGTACACGCCCACTGCTCGTG
GAGGTGCAAGCCCTTGTTGATGACAGTCATGGGCAGTCAAGACGTATGGCTTTAGGGCTTGATTATCAGCGTTTAGCCAT
GTTACTGGCTGTCATGCACCGCCATGGTGGCATTCACACGAGTGGGCAGGATGTGTACGTCAATGTCGTCGGCGGTGTTA
AAGTTATGGAGACAGGCTCAGACTTAGCGGTGTTACTTGCTTGTGCATCAAGCTTGCGTGCTAAAGCATTGCCGCCACGC
CTTGCCGTGTTTGGAGAAGTGGGGCTGAGCGGTGAGATTCGTCCTGTGCCTAACGGTCAAGAGCGTTTAAAAGAAGCCAG
TAAGCACGGCTTTACTCATGCCATCATTCCTAAGGCGAATGCCCCAAAAGACCAAACGATGTTTGGCGGCATTCACGTCA
TCGCTGTCGATCGTCTCGATGATGCTCTTGCTAAGGCATTTGAATTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(90-233)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(381-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.817

98.936

0.483
  radA Streptococcus pneumoniae Rx1

44.635

99.149

0.443
  radA Streptococcus pneumoniae D39

44.635

99.149

0.443
  radA Streptococcus pneumoniae R6

44.635

99.149

0.443
  radA Streptococcus pneumoniae TIGR4

44.635

99.149

0.443
  radA Streptococcus mitis SK321

44.635

99.149

0.443
  radA Streptococcus mitis NCTC 12261

44.421

99.149

0.44