Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LRP86_RS06680 Genome accession   NZ_CP089973
Coordinates   1436876..1438243 (-) Length   455 a.a.
NCBI ID   WP_003185644.1    Uniprot ID   J2YBF9
Organism   Pseudomonas brassicacearum strain WCS365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1431876..1443243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRP86_RS06655 (LRP86_01329) - 1431983..1432702 (+) 720 WP_028237100.1 GntR family transcriptional regulator -
  LRP86_RS06660 (LRP86_01330) yjiA 1432694..1433662 (-) 969 WP_013694246.1 GTPase -
  LRP86_RS06665 (LRP86_01331) - 1433946..1434143 (-) 198 WP_003201656.1 YbdD/YjiX family protein -
  LRP86_RS06670 (LRP86_01332) - 1434159..1436225 (-) 2067 WP_003205773.1 carbon starvation CstA family protein -
  LRP86_RS06675 (LRP86_01333) - 1436383..1436739 (+) 357 WP_003205774.1 PilZ domain-containing protein -
  LRP86_RS06680 (LRP86_01334) radA 1436876..1438243 (-) 1368 WP_003185644.1 DNA repair protein RadA Machinery gene
  LRP86_RS06685 (LRP86_01335) - 1438286..1438834 (-) 549 WP_003205776.1 ankyrin repeat domain-containing protein -
  LRP86_RS06690 (LRP86_01336) katB 1438987..1440528 (-) 1542 WP_003205777.1 catalase KatB -
  LRP86_RS06695 (LRP86_01337) mscL 1440811..1441224 (+) 414 WP_003205779.1 large-conductance mechanosensitive channel protein MscL -
  LRP86_RS06700 (LRP86_01338) - 1441281..1442057 (-) 777 WP_003205780.1 ferredoxin--NADP reductase -
  LRP86_RS06705 (LRP86_01339) - 1442351..1443064 (+) 714 WP_003205782.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48800.28 Da        Isoelectric Point: 6.8987

>NTDB_id=639539 LRP86_RS06680 WP_003185644.1 1436876..1438243(-) (radA) [Pseudomonas brassicacearum strain WCS365]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=639539 LRP86_RS06680 WP_003185644.1 1436876..1438243(-) (radA) [Pseudomonas brassicacearum strain WCS365]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGCGAATG
CGGGGCCTGGAACACCCTGACTGAAACCATGGTGGAAAGCGGCGGCGCGGCGGCACCCACCGGTCGCACGGGCTGGGCCG
GTCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAAGAAATCCCGCGTTTCTCCACCGCATCCGGTGAACTG
GACCGCGTGCTGGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCCACCAT
CTTGTTGCAAACCTTGTGCAACCTCGCCACCCGCATGCCGGCGCTGTACGTCACTGGCGAAGAATCCCAGCAGCAGGTCG
CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAGACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCCCC
GGGCGGCGTGTCCCAGGTGCGCGAAAGCGCGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGCGCACTGGCGGGGCCGCGGGTGTTGGAGCACATGGTCGATACCGTGTTGTATTTCGAA
GGCGAATCCGATGGGCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCTGTCAACGAACTGGGTGTGTTCGG
CATGACCGATAGAGGTCTGAAAGAAGTCTCAAACCCTTCGGCGATCTTTCTGACGCGTGCCCAGGAAGAAGTCCCCGGTA
GCGTGGTCATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTCGAAGTGCAAGCGCTGGTGGACGACAGCCACCTGGCG
AACCCGCGCCGGGTCACCCTGGGCCTGGATCAGAATCGGTTGGCCATGTTGTTGGCGGTGTTGCATCGACACGGCGGGAT
TCCGACTCACGACCAGGACGTGTTCCTCAACGTCGTGGGTGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAACCGGCCGCTGCCCCACGACCTGTTGGTATTCGGCGAAGTCGGGCTGTCGGGC
GAAGTGCGGCCGGTGCCCAGTGGCCAGGAGCGGCTCAAGGAGGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCCCCGCCGGGGTTGCAGATCATTGCCGTGACACGCCTGGAACAGGCGTTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YBF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464