Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LXA46_RS05715 Genome accession   NZ_CP089948
Coordinates   1157565..1158374 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae TIGR4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152565..1163374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA46_RS11080 - 1154017..1154865 (-) 849 Protein_1146 DEAD/DEAH box helicase family protein -
  LXA46_RS05700 (LXA46_05690) - 1155030..1156901 (-) 1872 WP_000150986.1 Eco57I restriction-modification methylase domain-containing protein -
  LXA46_RS05705 (LXA46_05695) - 1156976..1157230 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LXA46_RS05710 (LXA46_05700) relB 1157232..1157474 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  LXA46_RS05715 (LXA46_05705) vicX 1157565..1158374 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  LXA46_RS05720 (LXA46_05710) micB 1158376..1159725 (-) 1350 WP_000886219.1 cell wall metabolism sensor histidine kinase VicK Regulator
  LXA46_RS05725 (LXA46_05715) micA 1159718..1160422 (-) 705 WP_000722076.1 response regulator YycF Regulator
  LXA46_RS05730 (LXA46_05720) mutY 1160478..1161653 (-) 1176 WP_000886146.1 A/G-specific adenine glycosylase -
  LXA46_RS10935 - 1161750..1161875 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=639329 LXA46_RS05715 WP_001289493.1 1157565..1158374(-) (vicX) [Streptococcus pneumoniae TIGR4]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=639329 LXA46_RS05715 WP_001289493.1 1157565..1158374(-) (vicX) [Streptococcus pneumoniae TIGR4]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTCTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGTTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773