Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LVO07_RS01110 Genome accession   NZ_CP089930
Coordinates   193132..193761 (-) Length   209 a.a.
NCBI ID   WP_000839139.1    Uniprot ID   -
Organism   Escherichia coli strain E69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 188132..198761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVO07_RS01095 (LVO07_01095) helD 188374..190428 (-) 2055 WP_225762994.1 DNA helicase IV -
  LVO07_RS01100 (LVO07_01100) yccF 190551..190997 (+) 447 WP_001261238.1 YccF domain-containing protein -
  LVO07_RS01105 (LVO07_01105) yccS 191007..193169 (+) 2163 WP_222679839.1 YccS family putative transporter -
  LVO07_RS01110 (LVO07_01110) sxy/tfoX 193132..193761 (-) 630 WP_000839139.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LVO07_RS01115 (LVO07_01115) sulA 193979..194488 (+) 510 WP_000288697.1 SOS-induced cell division inhibitor SulA -
  LVO07_RS01120 (LVO07_01120) ompA 194844..195896 (+) 1053 WP_024165063.1 porin OmpA -
  LVO07_RS01125 (LVO07_01125) matP 195972..196424 (-) 453 WP_000877169.1 macrodomain Ter protein MatP -
  LVO07_RS01130 (LVO07_01130) ycbZ 196610..198370 (+) 1761 WP_233073989.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24233.11 Da        Isoelectric Point: 9.2234

>NTDB_id=639199 LVO07_RS01110 WP_000839139.1 193132..193761(-) (sxy/tfoX) [Escherichia coli strain E69]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRFVTLN
YYRVDESLWRNQQKLVRLSKFSLDAALQEKSTRNIRQRLKDLPNMSYHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAILGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=639199 LVO07_RS01110 WP_000839139.1 193132..193761(-) (sxy/tfoX) [Escherichia coli strain E69]
ATGAAAAGCCTCTCTTATAAGCGGATCTATAAGTCACAAGAATACCTGGCTACGCTGGGCACCATTGAATACCGATCATT
GTTTGGTAGTTACAGTCTGACCGTTGATGACACGGTATTTGCAATGGTTTCTGATGGCGAGTTGTATCTTCGGGCTTGTG
AACAAAGTGCACAATACTGTGTAAAACATCCGCCAGTATGGCTGACATATAAAAAGTGTGGGCGGTTTGTTACCCTCAAT
TACTACCGGGTCGATGAAAGCCTATGGCGAAATCAACAAAAGCTGGTGCGCCTGTCGAAATTTTCTCTGGACGCCGCGCT
TCAAGAGAAAAGTACGCGCAATATCCGGCAACGGCTGAAAGATTTACCCAATATGTCTTACCATCTTGAGGCTATTCTCG
GGGAAGTGGGGATTAAGGATGTACGGGCGTTACGTATTCTTGGGGCGAAAATGTGTTGGCTGCGACTGCGGCAACAAAAC
AGTCTGGTGACAGAAAAAATCTTATTTATGCTTGAAGGCGCAATTCTCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCAGATTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

96.172

100

0.962