Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LVE68_RS12090 Genome accession   NZ_CP089928
Coordinates   2802694..2803089 (+) Length   131 a.a.
NCBI ID   WP_091515145.1    Uniprot ID   -
Organism   Microbulbifer sp. YPW16     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797694..2808089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE68_RS12065 (LVE68_12065) hemC 2798262..2799179 (-) 918 WP_232940656.1 hydroxymethylbilane synthase -
  LVE68_RS12070 (LVE68_12070) ruvX 2799250..2799681 (-) 432 WP_232940657.1 Holliday junction resolvase RuvX -
  LVE68_RS12075 (LVE68_12075) - 2799681..2800265 (-) 585 WP_232940658.1 YqgE/AlgH family protein -
  LVE68_RS12080 (LVE68_12080) - 2800331..2801239 (-) 909 WP_232940659.1 energy transducer TonB -
  LVE68_RS12085 (LVE68_12085) gshB 2801407..2802363 (-) 957 WP_232940660.1 glutathione synthase -
  LVE68_RS12090 (LVE68_12090) pilG 2802694..2803089 (+) 396 WP_091515145.1 twitching motility response regulator PilG Regulator
  LVE68_RS12095 (LVE68_12095) pilH 2803334..2803696 (+) 363 WP_232940661.1 twitching motility response regulator PilH -
  LVE68_RS12100 (LVE68_12100) - 2803712..2804254 (+) 543 WP_232940662.1 chemotaxis protein CheW -
  LVE68_RS12105 (LVE68_12105) - 2804414..2806558 (+) 2145 WP_232940663.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14376.62 Da        Isoelectric Point: 7.2148

>NTDB_id=639184 LVE68_RS12090 WP_091515145.1 2802694..2803089(+) (pilG) [Microbulbifer sp. YPW16]
MELNWESLTVMVIDDSKTIRRTAETLLQKAGCTVVTATDGFDALAKIADSRPDIIFVDIMMPRLDGYQTCALIKNNSEFR
ATPVVMLSSKDGLFDRAKGRVVGCDQYLTKPFSKSELMGAISAHAKPHHAA

Nucleotide


Download         Length: 396 bp        

>NTDB_id=639184 LVE68_RS12090 WP_091515145.1 2802694..2803089(+) (pilG) [Microbulbifer sp. YPW16]
ATGGAGCTGAACTGGGAAAGCCTGACGGTAATGGTGATCGACGACAGCAAGACGATCCGCCGCACCGCAGAAACTCTACT
GCAAAAAGCGGGTTGTACCGTCGTCACGGCCACCGATGGCTTCGATGCATTGGCAAAAATTGCCGATTCCCGCCCCGATA
TCATCTTTGTCGATATCATGATGCCGCGCCTCGACGGCTACCAGACCTGCGCACTGATCAAAAACAACAGCGAATTCCGC
GCAACCCCGGTAGTAATGCTCTCCAGTAAGGATGGCCTGTTCGATCGGGCAAAAGGGCGTGTTGTCGGCTGTGATCAATA
TTTAACCAAGCCGTTCAGCAAGAGTGAGCTGATGGGGGCGATTTCCGCTCACGCGAAGCCCCATCATGCGGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.387

94.656

0.695