Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVB87_RS10305 Genome accession   NZ_CP089925
Coordinates   2119303..2120685 (+) Length   460 a.a.
NCBI ID   WP_232897883.1    Uniprot ID   -
Organism   Lysobacter sp. KIS68-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2114303..2125685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB87_RS10285 (LVB87_10285) - 2114856..2116025 (+) 1170 WP_232897879.1 hypothetical protein -
  LVB87_RS10290 (LVB87_10290) - 2116022..2117188 (+) 1167 WP_232897880.1 glycosyltransferase family 4 protein -
  LVB87_RS10295 (LVB87_10295) - 2117191..2117952 (+) 762 WP_232897881.1 YdcF family protein -
  LVB87_RS10300 (LVB87_10300) - 2118076..2119149 (+) 1074 WP_232897882.1 polysaccharide biosynthesis/export family protein -
  LVB87_RS10305 (LVB87_10305) radA 2119303..2120685 (+) 1383 WP_232897883.1 DNA repair protein RadA Machinery gene
  LVB87_RS10310 (LVB87_10310) - 2120786..2121226 (+) 441 WP_232897884.1 response regulator -
  LVB87_RS10315 (LVB87_10315) - 2121153..2122715 (-) 1563 WP_232897885.1 DHA2 family efflux MFS transporter permease subunit -
  LVB87_RS10320 (LVB87_10320) - 2122731..2123915 (-) 1185 WP_232897886.1 efflux RND transporter periplasmic adaptor subunit -
  LVB87_RS10325 (LVB87_10325) - 2123912..2125384 (-) 1473 WP_232897887.1 efflux transporter outer membrane subunit -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48122.15 Da        Isoelectric Point: 7.8082

>NTDB_id=639137 LVB87_RS10305 WP_232897883.1 2119303..2120685(+) (radA) [Lysobacter sp. KIS68-7]
MAKSATKRSAHVCNECGADYAKWQGQCDACGAWNSLSEIALEAANQAPAARRSGWAGKVDPPKVTALRDVRSSEDARVPT
GIGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQALAQMGTTLPGLYVTGEESLAQVAGRAMRLGLPIDGLHALAETGV
ERILEQAVAHRPKVIVADSVQTLWTESIGAAPGSVSQVRESAARLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMGEKGLREVPNPSAIFLSGGSTAQPGSAVMVTREGTRPLLVEVQALVD
GSPLSNPRRVAVGLEQNRLAMLLAVLHRHGGVGVGDQDVFVNVVGGIRLQETAADLPVLLAVLSSLRDRPLAEKTVAFGE
VGLSGEIRPVPNGEERLREAATHGFKRAIVPKGNAPKAGAFKGLEMIAVERLGDALSAAV

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=639137 LVB87_RS10305 WP_232897883.1 2119303..2120685(+) (radA) [Lysobacter sp. KIS68-7]
ATGGCCAAGTCCGCCACCAAACGCTCCGCCCACGTCTGCAACGAATGCGGCGCCGATTACGCCAAGTGGCAAGGGCAATG
CGATGCGTGCGGTGCATGGAACTCGCTGAGCGAAATCGCGCTGGAAGCCGCGAACCAGGCGCCCGCCGCGCGCCGGTCCG
GCTGGGCCGGCAAGGTCGACCCGCCGAAGGTCACCGCACTGCGCGACGTGCGCAGCAGCGAAGACGCGCGCGTGCCCACC
GGCATCGGCGAATTCGATCGCGTGCTCGGCGGCGGCTTGGTGGAAGGCGCGGTGGTGCTGGTGGGCGGCGATCCGGGCAT
CGGCAAGTCGACGCTGTTGCTGCAGGCGCTCGCGCAGATGGGCACGACCTTGCCGGGACTGTACGTCACGGGCGAGGAAT
CGCTCGCGCAGGTCGCCGGCCGCGCCATGCGCCTCGGGCTGCCGATCGATGGCTTGCATGCACTGGCGGAAACCGGCGTC
GAACGCATCCTCGAACAGGCCGTCGCGCATCGCCCGAAGGTGATCGTTGCCGATTCGGTGCAGACGTTGTGGACAGAATC
CATCGGCGCAGCGCCCGGTTCGGTAAGCCAGGTGCGCGAGAGCGCCGCGCGCCTGGTGCGTTACGCGAAGGAAACCGGCA
CCACGGTGTTCCTCGTGGGCCATGTCACCAAGGAGGGCGGCATCGCCGGTCCGCGCGTGCTGGAACACATGGTGGATGCG
GTGCTGTATTTCGAAGGCGAGAGCGGCAGCCGCTTCCGCGTGTTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGA
GCTCGGCGTGTTCGCGATGGGCGAGAAGGGCCTGCGCGAAGTGCCCAATCCTTCCGCGATCTTCCTTTCCGGCGGCAGCA
CCGCGCAGCCGGGCAGTGCGGTGATGGTCACGCGCGAAGGCACGCGCCCCTTGCTGGTGGAAGTGCAGGCGCTGGTGGAT
GGTTCGCCGCTGTCGAATCCGCGCCGCGTCGCGGTGGGCCTGGAACAGAATCGCCTCGCCATGCTGCTGGCCGTGCTGCA
TCGCCATGGCGGCGTGGGCGTGGGCGACCAGGACGTGTTCGTCAACGTCGTCGGCGGCATCCGCCTGCAGGAAACCGCGG
CGGACCTCCCGGTGCTGCTCGCGGTGCTGTCCTCGCTGCGCGATCGGCCCCTGGCGGAGAAGACCGTGGCCTTCGGCGAA
GTCGGCCTCTCGGGCGAGATCCGCCCGGTGCCCAACGGCGAGGAACGCCTGCGCGAAGCCGCGACGCATGGTTTCAAGCG
CGCCATCGTGCCGAAGGGAAATGCGCCGAAGGCCGGCGCGTTCAAGGGGCTCGAAATGATCGCGGTGGAGCGCTTGGGCG
ACGCTTTGTCCGCCGCGGTCTGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(78-152)

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.472

99.565

0.483
  radA Streptococcus pneumoniae Rx1

44.469

98.261

0.437
  radA Streptococcus pneumoniae D39

44.469

98.261

0.437
  radA Streptococcus pneumoniae R6

44.469

98.261

0.437
  radA Streptococcus pneumoniae TIGR4

44.469

98.261

0.437
  radA Streptococcus mitis NCTC 12261

44.469

98.261

0.437
  radA Streptococcus mitis SK321

45.814

93.478

0.428