Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LR951_RS16360 Genome accession   NZ_CP089884
Coordinates   3315880..3316476 (-) Length   198 a.a.
NCBI ID   WP_004893148.1    Uniprot ID   A0A483M0T8
Organism   Klebsiella pneumoniae strain KP102     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3310880..3321476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LR951_RS16345 (LR951_16315) helD 3311088..3313142 (-) 2055 WP_014907883.1 DNA helicase IV -
  LR951_RS16350 (LR951_16320) - 3313267..3313713 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LR951_RS16355 (LR951_16325) yccS 3313731..3315866 (+) 2136 WP_021465041.1 YccS family putative transporter -
  LR951_RS16360 (LR951_16330) sxy/tfoX 3315880..3316476 (-) 597 WP_004893148.1 TfoX/Sxy family DNA transformation protein Regulator
  LR951_RS16365 (LR951_16335) sulA 3316825..3317334 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LR951_RS16370 (LR951_16340) ompA 3317687..3318757 (+) 1071 WP_002898408.1 porin OmpA -
  LR951_RS16375 (LR951_16345) matP 3318889..3319341 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LR951_RS16380 (LR951_16350) - 3319527..3321284 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22562.12 Da        Isoelectric Point: 10.1298

>NTDB_id=639069 LR951_RS16360 WP_004893148.1 3315880..3316476(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP102]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIGGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=639069 LR951_RS16360 WP_004893148.1 3315880..3316476(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP102]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCAGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGGCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A483M0T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51