Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LVQ72_RS16115 Genome accession   NZ_CP089880
Coordinates   3245613..3246209 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain KP309     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3240613..3251209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVQ72_RS16100 (LVQ72_16080) helD 3240821..3242875 (-) 2055 WP_277745199.1 DNA helicase IV -
  LVQ72_RS16105 (LVQ72_16085) - 3243000..3243446 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LVQ72_RS16110 (LVQ72_16090) yccS 3243464..3245599 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LVQ72_RS16115 (LVQ72_16095) sxy/tfoX 3245613..3246209 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  LVQ72_RS16120 (LVQ72_16100) sulA 3246558..3247067 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LVQ72_RS16125 (LVQ72_16105) ompA 3247420..3248490 (+) 1071 WP_002898408.1 porin OmpA -
  LVQ72_RS16130 (LVQ72_16110) matP 3248622..3249074 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LVQ72_RS16135 (LVQ72_16115) - 3249260..3251017 (+) 1758 WP_048254375.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=639022 LVQ72_RS16115 WP_004150836.1 3245613..3246209(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP309]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=639022 LVQ72_RS16115 WP_004150836.1 3245613..3246209(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP309]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTATCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51