Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   X636_RS02635 Genome accession   NC_023018
Coordinates   563210..564715 (-) Length   501 a.a.
NCBI ID   WP_369798653.1    Uniprot ID   -
Organism   Pandoraea pnomenusa     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558210..569715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X636_RS02605 (X636_13235) mutY 558227..559396 (+) 1170 WP_024788677.1 A/G-specific adenine glycosylase -
  X636_RS02610 (X636_13240) rapZ 559430..560302 (-) 873 WP_023872989.1 RNase adapter RapZ -
  X636_RS02615 (X636_13245) - 560483..560809 (-) 327 WP_023597765.1 PsiF family protein -
  X636_RS02620 (X636_13250) hprK 560963..561928 (-) 966 WP_023597764.1 HPr(Ser) kinase/phosphatase -
  X636_RS02625 (X636_13255) ptsN 562028..562483 (-) 456 WP_023597763.1 PTS IIA-like nitrogen regulatory protein PtsN -
  X636_RS02630 (X636_13260) hpf 562720..563073 (-) 354 WP_023597762.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  X636_RS02635 (X636_13265) rpoN/rpoN1 563210..564715 (-) 1506 WP_369798653.1 RNA polymerase factor sigma-54 Machinery gene
  X636_RS02640 (X636_13270) lptB 564792..565562 (-) 771 WP_028731000.1 LPS export ABC transporter ATP-binding protein -
  X636_RS02645 (X636_13275) lptA 565585..566283 (-) 699 WP_023597759.1 lipopolysaccharide transport periplasmic protein LptA -
  X636_RS02650 (X636_13280) lptC 566280..566939 (-) 660 WP_023597758.1 LPS export ABC transporter periplasmic protein LptC -
  X636_RS02655 (X636_13285) - 566964..567449 (-) 486 WP_048806815.1 HAD family hydrolase -
  X636_RS02660 (X636_13290) - 567557..568537 (-) 981 WP_023597756.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56062.15 Da        Isoelectric Point: 5.9083

>NTDB_id=63899 X636_RS02635 WP_369798653.1 563210..564715(-) (rpoN/rpoN1) [Pandoraea pnomenusa]
MKARHAMKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSTSA
SSASEGHESANGHDETRELDGQTRFDDSNQDSGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKAGP
RDRALVEFLIESLDEDGYLGTMLDEIQADMPEELALETEEINAALALLQSFDPAGVGARTPSECLRLQLQRLPPSNVRTL
SLRIVSDHLELLAARDYTRLRRLLGVSEDSLRAAHHLIRSLDPFPGAAYGSPQADYVVPDVLVRKQGSNWIAELNPEVMP
RLRINEMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLG
LHESTISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVAR
RTVAKYREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=63899 X636_RS02635 WP_369798653.1 563210..564715(-) (rpoN/rpoN1) [Pandoraea pnomenusa]
ATGAAGGCGAGACACGCTATGAAACCGACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCA
ATCCATCCGGTTGTTGCAACTGTCGACGCTCGAACTTCAGCAGGAAGTCGAGCACGCCCTCACCCAGAACCCGATGCTCG
AGCGCGAGGACGACTGGCTCGCGGGCTCGGTACGTGTCGGCACGGACGGGTCGCTTCGCAACGAGCGCAGCACGTCGGCG
AGCAGCGCCAGCGAGGGCCATGAGTCCGCCAACGGCCATGACGAAACCCGCGAGCTCGACGGCCAGACCCGCTTCGACGA
CAGCAACCAGGACAGCGGCAGCGATTGGAGTCTTAACGATTTCGCCCGTTCGGGCAGCGCCTCGGACGACGACGACAACG
CGCGCCCGCAGTTGCACGTCGATCACCCCAACCTTCGCGAACACCTGCTCGCGCAGCTGCGCCTGACCAAGGCGGGGCCG
CGCGATCGCGCGCTTGTCGAATTCCTGATCGAATCGCTCGACGAAGACGGCTACCTCGGCACCATGCTCGACGAAATCCA
GGCGGATATGCCTGAAGAGCTGGCGCTCGAGACCGAGGAGATCAACGCGGCGCTCGCGCTCCTGCAGAGCTTCGATCCGG
CCGGGGTGGGTGCCCGTACGCCGTCCGAATGCCTGCGCCTTCAGTTGCAGCGCCTGCCCCCGAGCAATGTGCGCACGCTC
TCGCTGCGCATCGTCTCGGATCACCTGGAACTGCTCGCCGCGCGCGATTACACGCGTTTGCGTCGCCTGCTCGGCGTGAG
CGAAGACAGCCTGCGCGCGGCGCATCACCTGATTCGCTCCCTCGACCCTTTCCCCGGCGCGGCCTACGGCTCGCCGCAGG
CCGATTACGTGGTGCCCGACGTGCTGGTGCGCAAGCAGGGCAGCAACTGGATCGCCGAACTCAACCCCGAGGTCATGCCG
CGGCTGCGCATCAACGAGATGTACGCGCGAATTCTGCGAAACAACCGCAACGATCCGGGCACCGGCAATCTGCAGCAACA
GCTCCAGGAAGCCCGCTGGCTGATCAAGAACATCCAGCAACGGTTCGACACGATCCTGCGTGTCGCACAGGCGATCGTCG
AGCGTCAGAAGAACTTCTTCACGCACGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGT
TTACATGAATCCACGATTTCACGGGTGACAACCAGTAAGTACATGCTCACTCCATTCGGGACTTTCGAGCTCAAGTACTT
CTTTGGTTCGCACGTGGCCACGGAGGCGGGCGGCGCAGCGTCATCGACGGCCATCCGCGCACTCATCAAGCAACTCATAG
GAGCAGAAGACCCGCAGAGCCCCCTTTCCGACAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGGTTCGTGGTTGCGCGG
CGCACTGTCGCGAAGTACCGCGAGGCCATGCGAATCCCCGCAGTCAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(11-54)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.463

100

0.685

Multiple sequence alignment