Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OC371_RS18055 Genome accession   NZ_CP106988
Coordinates   3712165..3712491 (-) Length   108 a.a.
NCBI ID   WP_024434967.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NY13623     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3707165..3717491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC371_RS18035 (OC371_18035) - 3707265..3707894 (-) 630 WP_000219967.1 FHA domain-containing protein -
  OC371_RS18040 (OC371_18040) gspD 3707935..3710211 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  OC371_RS18045 (OC371_18045) - 3710253..3711089 (-) 837 WP_000870033.1 type II secretion system protein N -
  OC371_RS18050 (OC371_18050) gspN 3711089..3711832 (-) 744 WP_000730343.1 type II secretion system protein N -
  OC371_RS18055 (OC371_18055) hns 3712165..3712491 (-) 327 WP_024434967.1 H-NS family nucleoid-associated regulatory protein Regulator
  OC371_RS18060 (OC371_18060) - 3712657..3713589 (+) 933 WP_001043692.1 IS5-like element ISAba13 family transposase -
  OC371_RS18065 (OC371_18065) - 3713734..3714174 (-) 441 WP_000661569.1 thioesterase family protein -
  OC371_RS18070 (OC371_18070) - 3714182..3715375 (-) 1194 WP_000681783.1 hypothetical protein -
  OC371_RS18075 (OC371_18075) - 3715385..3716224 (-) 840 WP_001230204.1 hypothetical protein -
  OC371_RS18080 (OC371_18080) - 3716233..3717000 (-) 768 WP_000897421.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12471.13 Da        Isoelectric Point: 5.3445

>NTDB_id=638976 OC371_RS18055 WP_024434967.1 3712165..3712491(-) (hns) [Acinetobacter baumannii strain NY13623]
MKPDISELSVEELKRLHEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=638976 OC371_RS18055 WP_024434967.1 3712165..3712491(-) (hns) [Acinetobacter baumannii strain NY13623]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACATGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991