Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LVQ73_RS16615 Genome accession   NZ_CP089874
Coordinates   3324291..3324887 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3319291..3329887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVQ73_RS16600 (LVQ73_16580) helD 3319499..3321553 (-) 2055 WP_004179218.1 DNA helicase IV -
  LVQ73_RS16605 (LVQ73_16585) - 3321678..3322124 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LVQ73_RS16610 (LVQ73_16590) yccS 3322142..3324277 (+) 2136 WP_032434245.1 YccS family putative transporter -
  LVQ73_RS16615 (LVQ73_16595) sxy/tfoX 3324291..3324887 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LVQ73_RS16620 (LVQ73_16600) sulA 3325236..3325745 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LVQ73_RS16625 (LVQ73_16605) ompA 3326098..3327168 (+) 1071 WP_002898408.1 porin OmpA -
  LVQ73_RS16630 (LVQ73_16610) matP 3327300..3327752 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LVQ73_RS16635 (LVQ73_16615) - 3327938..3329695 (+) 1758 WP_032434243.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=638974 LVQ73_RS16615 WP_004179217.1 3324291..3324887(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP106]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=638974 LVQ73_RS16615 WP_004179217.1 3324291..3324887(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP106]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51