Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LVD18_RS02180 Genome accession   NZ_CP089850
Coordinates   440475..442142 (-) Length   555 a.a.
NCBI ID   WP_087448785.1    Uniprot ID   A0A1Y0F8J3
Organism   Ligilactobacillus salivarius strain BNS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 435475..447142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD18_RS02150 (LVD18_02150) - 436131..437945 (-) 1815 WP_232751274.1 DUF2207 domain-containing protein -
  LVD18_RS02155 (LVD18_02155) - 438049..438348 (-) 300 WP_003699862.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  LVD18_RS02160 (LVD18_02160) yihA 438366..438956 (-) 591 WP_232751275.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LVD18_RS02165 (LVD18_02165) - 439039..439263 (-) 225 WP_003699860.1 YneF family protein -
  LVD18_RS02170 (LVD18_02170) - 439390..439644 (-) 255 WP_003704077.1 DUF896 domain-containing protein -
  LVD18_RS02175 (LVD18_02175) lexA 439791..440411 (+) 621 WP_003699857.1 transcriptional repressor LexA -
  LVD18_RS02180 (LVD18_02180) recN 440475..442142 (-) 1668 WP_087448785.1 DNA repair protein RecN Machinery gene
  LVD18_RS02185 (LVD18_02185) - 442147..442605 (-) 459 WP_003699854.1 arginine repressor -
  LVD18_RS02190 (LVD18_02190) - 442630..443457 (-) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  LVD18_RS02195 (LVD18_02195) - 443460..444377 (-) 918 WP_174633251.1 polyprenyl synthetase family protein -
  LVD18_RS02200 (LVD18_02200) - 444343..444570 (-) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  LVD18_RS02205 (LVD18_02205) xseA 444570..445910 (-) 1341 WP_034982367.1 exodeoxyribonuclease VII large subunit -
  LVD18_RS02210 (LVD18_02210) folD 445903..446760 (-) 858 WP_011475808.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63135.88 Da        Isoelectric Point: 4.8829

>NTDB_id=638912 LVD18_RS02180 WP_087448785.1 440475..442142(-) (recN) [Ligilactobacillus salivarius strain BNS11]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDALDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKCLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=638912 LVD18_RS02180 WP_087448785.1 440475..442142(-) (recN) [Ligilactobacillus salivarius strain BNS11]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTAAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGCACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATGTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAGCAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0F8J3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.427

100

0.499