Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LVE67_RS05070 Genome accession   NZ_CP089849
Coordinates   1092379..1092936 (-) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA0523     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1087379..1097936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE67_RS05055 (LVE67_05055) pilY1 1087477..1090962 (-) 3486 WP_003110421.1 type 4a pilus biogenesis protein PilY1 -
  LVE67_RS05060 (LVE67_05060) pilX 1090974..1091561 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  LVE67_RS05065 (LVE67_05065) pilW 1091558..1092382 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LVE67_RS05070 (LVE67_05070) pilV 1092379..1092936 (-) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  LVE67_RS05075 (LVE67_05075) - 1092927..1093433 (-) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  LVE67_RS05080 (LVE67_05080) - 1093539..1094048 (-) 510 WP_003110424.1 GspH/FimT family pseudopilin -
  LVE67_RS05085 (LVE67_05085) thiO 1094183..1095277 (+) 1095 WP_009316267.1 glycine oxidase ThiO -
  LVE67_RS05090 (LVE67_05090) pilR 1095323..1096660 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=638881 LVE67_RS05070 WP_003110422.1 1092379..1092936(-) (pilV) [Pseudomonas aeruginosa strain PA0523]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=638881 LVE67_RS05070 WP_003110422.1 1092379..1092936(-) (pilV) [Pseudomonas aeruginosa strain PA0523]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGTATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984