Detailed information NTG0638874

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LSG25_RS19520
• Genome accession: NZ_CP089848
• Coordinates: 4272410..4273543 (+)
• Length: 377 a.a.
• NCBI ID: WP_232742524.1
• Uniprot ID: -
• Organism: Paralcaligenes sp. KSB-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4267410..4278543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSG25_RS19495 (LSG25_19495)	-	4267868..4270462 (+)	2595	WP_232742519.1	AsmA family protein	-
LSG25_RS19500 (LSG25_19500)	-	4270459..4270845 (+)	387	WP_232742520.1	MOSC N-terminal beta barrel domain-containing protein	-
LSG25_RS19505 (LSG25_19505)	-	4270850..4271101 (-)	252	WP_232742521.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LSG25_RS19510 (LSG25_19510)	coaD	4271177..4271680 (-)	504	WP_232742522.1	pantetheine-phosphate adenylyltransferase	-
LSG25_RS19515 (LSG25_19515)	rsmD	4271757..4272347 (-)	591	WP_232742523.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LSG25_RS19520 (LSG25_19520)	pilA	4272410..4273543 (+)	1134	WP_232742524.1	signal recognition particle-docking protein FtsY	Machinery gene
LSG25_RS19525 (LSG25_19525)	-	4273576..4275168 (-)	1593	WP_232742525.1	CYTH and CHAD domain-containing protein	-
LSG25_RS19530 (LSG25_19530)	-	4275287..4276099 (-)	813	WP_232742526.1	IclR family transcriptional regulator	-
LSG25_RS19535 (LSG25_19535)	ribBA	4276303..4277466 (+)	1164	WP_232742527.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
LSG25_RS19540 (LSG25_19540)	ribH	4277481..4277990 (+)	510	WP_232742528.1	6,7-dimethyl-8-ribityllumazine synthase	-
LSG25_RS19545 (LSG25_19545)	nusB	4277959..4278480 (+)	522	WP_232742529.1	transcription antitermination factor NusB	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 39049.66 Da
• Isoelectric Point: 5.1472

>NTDB_id=638874 LSG25_RS19520 WP_232742524.1 4272410..4273543(+) (pilA) [Paralcaligenes sp. KSB-10]
MFSIFKRKKSTSGESPESPAGAPEAAAEIDAAVPAEPPAAETNTLAAWPQSGPEGSDTETQLVPAVEPAAEPVEKTSWLS
RLKKGLSRTGQNIGGLFVGVKVDEALFDELETALIMADAGTLASEKLLTALRARVRKEKIEDAAQVKAALRDILADHLAP
LEKPFPLGQVAPLVIMIAGVNGAGKTTSIGKLANTFQRQGASVLLAAGDTFRAAAREQLIAWGARNNVTVIAQEGGDPAA
VAFDAVNAGRARQAGVVMVDTAGRLPTQLHLMEELKKIKRVIGKADSAAPHEVLLVIDGNTGQNAIAQIRAFDAAVTLTG
LVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLDDLQPFVAREFAAALVGE

Nucleotide

• Length: 1134 bp

>NTDB_id=638874 LSG25_RS19520 WP_232742524.1 4272410..4273543(+) (pilA) [Paralcaligenes sp. KSB-10]
ATGTTCAGCATTTTTAAAAGAAAAAAATCGACTTCAGGCGAATCGCCGGAATCGCCGGCGGGCGCTCCCGAGGCCGCGGC
CGAAATCGATGCGGCTGTCCCGGCCGAGCCACCGGCTGCCGAGACAAACACGCTTGCCGCCTGGCCGCAGTCCGGGCCAG
AGGGTTCGGATACCGAAACGCAGCTCGTGCCGGCCGTGGAGCCCGCCGCCGAGCCCGTGGAAAAAACAAGCTGGCTGTCG
AGGTTGAAAAAAGGCCTGTCGCGCACCGGCCAGAATATCGGCGGTCTGTTTGTTGGAGTCAAGGTCGACGAAGCGCTGTT
CGATGAACTGGAAACCGCGCTGATCATGGCCGACGCAGGCACGCTGGCCAGCGAAAAACTGCTCACGGCCTTGCGTGCCC
GGGTCCGCAAGGAAAAAATCGAAGATGCGGCGCAGGTCAAGGCGGCATTGCGCGACATACTCGCCGATCACCTGGCGCCG
CTTGAAAAACCCTTCCCCTTGGGGCAGGTTGCGCCACTGGTCATCATGATTGCCGGTGTAAACGGCGCGGGAAAAACAAC
CTCCATAGGTAAATTGGCCAATACCTTCCAGCGCCAGGGAGCCAGCGTACTGCTGGCCGCGGGCGATACATTCCGCGCGG
CCGCGCGCGAACAGCTTATCGCCTGGGGGGCGCGCAATAATGTGACCGTGATTGCCCAGGAGGGCGGCGATCCCGCCGCG
GTGGCTTTCGATGCGGTCAATGCCGGGCGAGCGCGCCAGGCCGGGGTCGTCATGGTGGATACGGCGGGCCGCTTGCCGAC
CCAGCTGCATCTGATGGAAGAGCTGAAAAAAATCAAACGCGTCATAGGAAAGGCGGATTCGGCCGCTCCGCACGAAGTCT
TGTTGGTTATCGATGGCAATACCGGGCAGAACGCCATTGCTCAAATTCGCGCCTTCGATGCCGCCGTCACCCTGACCGGG
CTGGTGGTCACCAAGCTCGATGGCACGGCCAAGGGCGGCACGCTGGCGGCGGTTGCGGCGGGCAGCCAGGGGGTAAGGCC
GGTGCCGGTTTACTGGATAGGGGTGGGCGAAGGCCTGGACGATTTGCAGCCTTTCGTGGCGCGTGAATTCGCGGCGGCCC
TGGTAGGGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (173-375)

• SRP54-type protein, helical bundle domain (SRP54_N) (93-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.678	97.347	0.523