Detailed information NTG0638871

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: LSG25_RS15225
• Genome accession: NZ_CP089848
• Coordinates: 3297507..3298922 (-)
• Length: 471 a.a.
• NCBI ID: WP_232741751.1
• Uniprot ID: -
• Organism: Paralcaligenes sp. KSB-10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3292507..3303922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSG25_RS15205 (LSG25_15205)	-	3293100..3294707 (+)	1608	WP_232741747.1	peptide chain release factor 3	-
LSG25_RS15210 (LSG25_15210)	-	3294746..3295399 (+)	654	WP_232741748.1	hypothetical protein	-
LSG25_RS15215 (LSG25_15215)	bfr	3296253..3296723 (-)	471	WP_232741749.1	bacterioferritin	-
LSG25_RS15220 (LSG25_15220)	-	3297129..3297407 (-)	279	WP_232741750.1	bacterioferritin-associated ferredoxin	-
LSG25_RS15225 (LSG25_15225)	rpoN/rpoN1	3297507..3298922 (-)	1416	WP_232741751.1	RNA polymerase factor sigma-54	Machinery gene
LSG25_RS15230 (LSG25_15230)	-	3298921..3299490 (+)	570	WP_232741752.1	hypothetical protein	-
LSG25_RS15235 (LSG25_15235)	leuA	3299760..3301457 (+)	1698	WP_232741753.1	2-isopropylmalate synthase	-
LSG25_RS15240 (LSG25_15240)	-	3301555..3301896 (-)	342	WP_232741754.1	DUF1840 domain-containing protein	-

Sequence

Protein

• Length: 471 a.a.
• Molecular weight: 52484.74 Da
• Isoelectric Point: 5.1706

>NTDB_id=638871 LSG25_RS15225 WP_232741751.1 3297507..3298922(-) (rpoN/rpoN1) [Paralcaligenes sp. KSB-10]
MQNIVPMQSRQSLELRHHQQLTLTPQLQQSIRFLQLSAQDLENEIAQAMLDNPLLERQEEYDIDTADAEPGEPDSPREDW
SLLALPNRGDDPDGEPTRPEAAQAETLQQHLLRQLHLTRALPRDIALVTLLIEELDENGYLLSSLEEIAACLPPEIEIDA
DELATALSLLQSFDPPGVGARSLADCLLLQMDQSEAVKGCDASVVACARQLARRHLDLLASGNLGKLCEALSCTHETLSR
AHRVLLALEPRPGRAWASSLADYVNPDVLVRKVRNRWLASLNPAVMPRLRVNAQYEHWLAREQGRGLLHEQLQQAYGLIK
SVGQRFETILRVTQAIVDRQQEFFEQGMQGMRPLLLRDIADELAMHESTVSRATRQKYVTTPWGVFELKRFFGAALGTDD
GTATSAAAVRSLILKLVSEESGKKPLSDSQIALRLNEQGVVIARRTVAKYREAAGIEPASLRKARASLELR

Nucleotide

• Length: 1416 bp

>NTDB_id=638871 LSG25_RS15225 WP_232741751.1 3297507..3298922(-) (rpoN/rpoN1) [Paralcaligenes sp. KSB-10]
ATGCAAAATATTGTACCTATGCAATCGCGCCAGTCCCTAGAACTTCGTCATCATCAGCAATTGACGCTGACCCCTCAGCT
GCAGCAATCGATTCGATTCCTGCAGCTATCGGCGCAAGATCTGGAAAATGAAATCGCCCAGGCAATGTTGGACAACCCCT
TGCTTGAACGGCAGGAAGAGTATGACATTGATACGGCCGATGCGGAACCCGGCGAGCCCGACTCGCCGCGCGAGGACTGG
TCATTGTTGGCTTTACCCAACCGCGGCGACGACCCTGACGGCGAACCGACGCGGCCCGAGGCGGCGCAGGCGGAAACCCT
GCAGCAGCATTTATTGCGCCAACTGCATCTGACGCGGGCGCTACCCAGGGATATCGCGCTGGTAACGCTGTTGATCGAGG
AACTGGACGAAAATGGCTACTTGCTGTCGTCCCTGGAGGAAATCGCAGCCTGTTTGCCGCCCGAGATCGAAATCGATGCC
GATGAACTGGCCACAGCCTTGAGCTTGCTGCAGTCCTTTGATCCTCCCGGAGTAGGCGCGCGGTCGCTGGCAGACTGCCT
GTTGTTGCAAATGGATCAGTCCGAAGCAGTAAAAGGGTGCGATGCGTCCGTAGTGGCTTGCGCCCGCCAACTGGCCCGGC
GGCATCTCGATTTGCTGGCGTCGGGCAATTTGGGCAAATTGTGCGAGGCCCTGTCCTGCACTCACGAGACCCTCAGCCGG
GCGCATCGCGTGCTCCTGGCGCTGGAACCCAGGCCAGGACGCGCCTGGGCAAGCTCGCTGGCCGATTATGTCAACCCCGA
CGTGCTGGTGCGTAAAGTCAGGAATCGATGGCTGGCGAGCCTGAATCCCGCGGTAATGCCCCGCTTGCGCGTCAATGCCC
AGTACGAGCACTGGCTGGCCCGGGAGCAGGGCCGCGGCCTGCTGCACGAGCAATTGCAGCAGGCCTACGGATTGATCAAG
AGCGTTGGCCAGCGGTTCGAGACGATTTTGCGCGTGACGCAAGCCATAGTCGATCGGCAGCAGGAGTTTTTCGAGCAGGG
CATGCAAGGCATGCGCCCCCTGCTGTTGCGCGATATCGCCGACGAACTCGCGATGCACGAGTCGACTGTGTCGCGAGCCA
CCCGGCAGAAATATGTGACGACGCCCTGGGGCGTTTTCGAACTGAAACGTTTTTTCGGTGCTGCGTTGGGCACCGATGAC
GGCACGGCCACTTCGGCGGCGGCTGTACGGTCCCTGATCCTCAAGCTGGTGTCCGAGGAATCGGGCAAAAAGCCTCTGTC
CGATAGCCAGATAGCGCTCAGGCTGAATGAGCAGGGCGTTGTGATTGCGCGCCGTACGGTGGCGAAATACCGCGAGGCGG
CGGGCATAGAGCCAGCCTCGCTGCGTAAGGCCAGGGCCTCCCTGGAGCTGCGTTAG

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (308-463)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (101-295)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	45.743	100	0.49