Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LSG25_RS08370 Genome accession   NZ_CP089848
Coordinates   1851793..1853145 (-) Length   450 a.a.
NCBI ID   WP_232744206.1    Uniprot ID   -
Organism   Paralcaligenes sp. KSB-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1846793..1858145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG25_RS08350 (LSG25_08350) - 1847343..1847699 (-) 357 WP_232744202.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LSG25_RS08355 (LSG25_08355) - 1847725..1848423 (-) 699 WP_232744203.1 3-deoxy-D-manno-octulosonic acid kinase -
  LSG25_RS08360 (LSG25_08360) - 1848426..1850930 (-) 2505 WP_232744204.1 ABC transporter permease -
  LSG25_RS08365 (LSG25_08365) - 1850935..1851711 (-) 777 WP_232744205.1 sulfite exporter TauE/SafE family protein -
  LSG25_RS08370 (LSG25_08370) radA 1851793..1853145 (-) 1353 WP_232744206.1 DNA repair protein RadA Machinery gene
  LSG25_RS08375 (LSG25_08375) - 1853170..1853886 (-) 717 WP_232744207.1 SDR family oxidoreductase -
  LSG25_RS08380 (LSG25_08380) alr 1853935..1855062 (-) 1128 WP_232744208.1 alanine racemase -
  LSG25_RS08385 (LSG25_08385) hpnC 1855222..1856046 (+) 825 WP_232744209.1 squalene synthase HpnC -
  LSG25_RS08390 (LSG25_08390) hpnD 1856093..1856956 (+) 864 WP_232744210.1 presqualene diphosphate synthase HpnD -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47671.06 Da        Isoelectric Point: 7.4142

>NTDB_id=638869 LSG25_RS08370 WP_232744206.1 1851793..1853145(-) (radA) [Paralcaligenes sp. KSB-10]
MAKSKTSYVCNECAGTSLKWAGKCPHCGAWNSLQESLDSGLPVHRFAPLAGASPIRSLAEIEARELPRQPSGLPEFDRVL
GGGLVAGAVVLIGGDPGIGKSTLLLQALVSLSKVANVLYVTGEESAEQVALRARRLDLACGDVNLLAEIRLEAIVAALTE
QRPSVAVIDSIQTLYSSELTAAPGSVSQVRECAAQLTRLAKQTGISIVMIGHVTKDGSLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAFKNRFGAVNELGVFAMTDKGLRGVSNPSALFLSQHDQDVAGSCVMATQEGTRPLLVEIQALVDSAHVPNPRR
LSVGLEATRLAMLLAVLHRHAGVATFDQDVFVNAVGGVKITEPAADLAVVLAIMSSLRNRPLPKGLIVFGEIGLAGEIRP
APRGQERLREAAKLGFGVALVPKANAPKQPIEGLEIWAVDRVDAAIDRLR

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=638869 LSG25_RS08370 WP_232744206.1 1851793..1853145(-) (radA) [Paralcaligenes sp. KSB-10]
ATGGCCAAATCAAAAACCTCATACGTCTGTAATGAATGCGCAGGAACCAGCCTGAAATGGGCGGGCAAATGCCCCCATTG
CGGCGCCTGGAATTCGCTCCAGGAGTCGCTCGATTCAGGCTTGCCCGTACACCGCTTTGCTCCCTTGGCGGGTGCCAGTC
CCATACGCAGCCTGGCCGAAATCGAAGCCCGCGAACTGCCGCGCCAGCCTTCGGGCCTTCCTGAGTTCGACCGGGTATTG
GGCGGCGGTCTGGTGGCCGGTGCCGTGGTGTTGATCGGCGGCGATCCGGGCATAGGCAAATCGACGCTTTTGCTGCAGGC
CCTGGTGTCCCTCTCCAAGGTGGCCAATGTTCTGTATGTGACGGGGGAAGAGTCCGCCGAGCAAGTAGCCTTGCGCGCCA
GGCGTCTCGACCTGGCCTGCGGCGATGTCAATCTGCTGGCTGAAATCCGCCTTGAAGCGATAGTGGCTGCATTGACCGAA
CAGCGGCCCAGCGTGGCGGTCATCGATTCGATCCAGACTCTGTATTCCAGCGAGCTCACCGCGGCTCCCGGCTCGGTGTC
GCAAGTACGGGAATGCGCCGCGCAACTGACGCGCCTGGCCAAGCAGACCGGTATTTCCATCGTCATGATCGGGCACGTCA
CCAAAGATGGCTCTTTGGCCGGGCCTCGTGTACTGGAACACATTGTCGATACTGTGCTGTATTTCGAAGGGGACACGCAC
TCGTCGTTTCGCCTGGTTCGAGCATTCAAGAACCGCTTTGGCGCGGTCAATGAACTGGGCGTATTCGCCATGACCGACAA
GGGCCTGCGCGGGGTCAGCAATCCGTCCGCCTTGTTCCTGTCGCAGCACGATCAGGATGTGGCGGGGTCTTGCGTGATGG
CTACGCAAGAGGGCACGCGGCCATTGCTGGTTGAAATCCAGGCGCTGGTCGACAGCGCGCATGTGCCCAATCCGCGCCGG
CTGTCGGTGGGCCTCGAGGCCACGCGTCTGGCCATGTTGCTGGCCGTGCTGCACCGGCATGCCGGGGTGGCCACCTTCGA
CCAGGATGTGTTTGTCAATGCGGTGGGCGGAGTCAAAATTACCGAACCCGCCGCCGATCTGGCGGTTGTGCTGGCCATCA
TGTCGTCTCTGCGCAACCGGCCATTGCCCAAAGGCCTGATCGTTTTCGGGGAAATCGGCCTGGCCGGCGAGATCCGGCCC
GCTCCTCGAGGCCAGGAGCGCTTGCGCGAGGCGGCGAAACTGGGTTTTGGCGTGGCGCTCGTGCCCAAGGCCAATGCACC
CAAACAGCCTATCGAAGGCCTGGAAATCTGGGCGGTGGACCGGGTGGACGCCGCCATAGATCGCTTGCGATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(356-444)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.455

100

0.504
  radA Streptococcus pneumoniae Rx1

48.235

94.444

0.456
  radA Streptococcus pneumoniae D39

48.235

94.444

0.456
  radA Streptococcus pneumoniae R6

48.235

94.444

0.456
  radA Streptococcus pneumoniae TIGR4

48.235

94.444

0.456
  radA Streptococcus mitis SK321

48.235

94.444

0.456
  radA Streptococcus mitis NCTC 12261

48

94.444

0.453