Detailed information NTG0638779

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OEG89_RS10245
• Genome accession: NZ_CP106929
• Coordinates: 2012168..2013160 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MFDS1001074
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2007168..2018160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OEG89_RS10225 (OEG89_10225)	otnK	2007943..2009205 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
OEG89_RS10230 (OEG89_10230)	ygbL	2009202..2009840 (+)	639	WP_001278994.1	aldolase	-
OEG89_RS10235 (OEG89_10235)	ygbM	2009845..2010621 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
OEG89_RS10240 (OEG89_10240)	ygbN	2010710..2012074 (+)	1365	WP_000104459.1	GntP family transporter	-
OEG89_RS10245 (OEG89_10245)	rpoS	2012168..2013160 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OEG89_RS10250 (OEG89_10250)	nlpD	2013223..2014317 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
OEG89_RS10255 (OEG89_10255)	pcm	2014502..2015128 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OEG89_RS10260 (OEG89_10260)	surE	2015122..2015883 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OEG89_RS10265 (OEG89_10265)	truD	2015864..2016913 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
OEG89_RS10270 (OEG89_10270)	ispF	2016910..2017389 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OEG89_RS10275 (OEG89_10275)	ispD	2017389..2018099 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=638779 OEG89_RS10245 WP_000081550.1 2012168..2013160(-) (rpoS) [Escherichia coli strain MFDS1001074]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=638779 OEG89_RS10245 WP_000081550.1 2012168..2013160(-) (rpoS) [Escherichia coli strain MFDS1001074]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715