Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LUY20_RS14275 Genome accession   NZ_CP089789
Coordinates   2895247..2895852 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00831     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2890247..2900852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY20_RS14260 helD 2890464..2892518 (-) 2055 WP_023228225.1 DNA helicase IV -
  LUY20_RS14265 - 2892642..2893088 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LUY20_RS14270 yccS 2893107..2895260 (+) 2154 WP_000950881.1 YccS family putative transporter -
  LUY20_RS14275 sxy/tfoX 2895247..2895852 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LUY20_RS14280 sulA 2896069..2896578 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LUY20_RS14285 ompA 2896935..2897987 (+) 1053 WP_001670727.1 porin OmpA -
  LUY20_RS14290 matP 2898059..2898511 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LUY20_RS14295 - 2898697..2900457 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=638677 LUY20_RS14275 WP_001202375.1 2895247..2895852(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00831]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=638677 LUY20_RS14275 WP_001202375.1 2895247..2895852(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00831]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751