Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL74_RS11095 Genome accession   NZ_CP106921
Coordinates   2107181..2107324 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102181..2112324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL74_RS11075 (NDL74_11075) pilA 2103229..2104482 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDL74_RS11080 (NDL74_11080) - 2104935..2105093 (+) 159 WP_154236104.1 hypothetical protein -
  NDL74_RS11085 (NDL74_11085) - 2105067..2105771 (-) 705 WP_265509517.1 opacity family porin -
  NDL74_RS11090 (NDL74_11090) pilE 2106311..2106814 (-) 504 WP_260245409.1 pilin Machinery gene
  NDL74_RS11095 (NDL74_11095) pilE 2107181..2107324 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  NDL74_RS11100 (NDL74_11100) - 2107429..2107509 (-) 81 Protein_2146 prepilin-type cleavage/methylation domain-containing protein -
  NDL74_RS11105 (NDL74_11105) pilE 2107627..2108058 (-) 432 WP_260245408.1 pilin Machinery gene
  NDL74_RS11110 (NDL74_11110) lpxC 2108164..2109087 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDL74_RS11935 - 2109589..2110317 (-) 729 WP_409261977.1 pilin -
  NDL74_RS11130 (NDL74_11130) - 2110343..2110558 (-) 216 Protein_2150 pilin -
  NDL74_RS11135 (NDL74_11135) - 2110931..2111062 (-) 132 WP_010356054.1 hypothetical protein -
  NDL74_RS11140 (NDL74_11140) - 2111144..2111832 (-) 689 Protein_2152 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=638664 NDL74_RS11095 WP_012503975.1 2107181..2107324(-) (pilE) [Neisseria gonorrhoeae strain 10272]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=638664 NDL74_RS11095 WP_012503975.1 2107181..2107324(-) (pilE) [Neisseria gonorrhoeae strain 10272]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447